RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 TANGO6Q9C0B7 1094 aa24.38■■□□□ 1.49
HDAC4-209ENST00000487617 VCPKMTQ9H867 229 aa24.38■■□□□ 1.49
HDAC4-209ENST00000487617 HELLSQ9NRZ9 838 aa24.38■■□□□ 1.49
HDAC4-209ENST00000487617 MAPK4P31152 587 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 TICAM2Q86XR7 235 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 ZNF444Q8N0Y2 327 aaPredicted RBP24.37■■□□□ 1.49
HDAC4-209ENST00000487617 SPICE1Q8N0Z3 855 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 PXYLP1Q8TE99 480 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.37■■□□□ 1.49
HDAC4-209ENST00000487617 OSBPL3Q9H4L5 887 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 GJD2Q9UKL4 321 aa24.37■■□□□ 1.49
HDAC4-209ENST00000487617 MYH8P13535 1937 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 SPDYE16A6NNV3 312 aaPredicted RBP24.36■■□□□ 1.49
HDAC4-209ENST00000487617 PRDM1O75626 825 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 CNMDO75829 334 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 SLC3A2P08195 630 aaKnown RBP24.36■■□□□ 1.49
HDAC4-209ENST00000487617 PPARAQ07869 468 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 COG2Q14746 738 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 LBX2Q6XYB7 198 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 FAM227BQ96M60 508 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 PORCNQ9H237 461 aa24.36■■□□□ 1.49
HDAC4-209ENST00000487617 A0A0D9SFI3 127 aa24.35■■□□□ 1.49
HDAC4-209ENST00000487617 CCL5P13501 91 aa24.35■■□□□ 1.49
HDAC4-209ENST00000487617 CCNA1P78396 465 aa24.35■■□□□ 1.49
HDAC4-209ENST00000487617 CWC22Q9HCG8 908 aaKnown RBP24.35■■□□□ 1.49
HDAC4-209ENST00000487617 HOXC10Q9NYD6 342 aa24.35■■□□□ 1.49
HDAC4-209ENST00000487617 KIAA0100Q14667 2235 aaKnown RBP24.34■■□□□ 1.49
HDAC4-209ENST00000487617 FOXP2O15409 715 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 RAD21O60216 631 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 INHAP05111 366 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 PDE4BQ07343 736 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 NMIQ13287 307 aaPredicted RBP24.34■■□□□ 1.49
HDAC4-209ENST00000487617 MCMDC2Q4G0Z9 681 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 VPS53Q5VIR6 699 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 NUDT12Q9BQG2 462 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 GOPCQ9HD26 462 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 BTBD7Q9P203 1132 aa24.34■■□□□ 1.49
HDAC4-209ENST00000487617 WDR46O15213 610 aaKnown RBP24.33■■□□□ 1.49
HDAC4-209ENST00000487617 GPR142Q7Z601 462 aa24.33■■□□□ 1.49
HDAC4-209ENST00000487617 PLEKHH3Q7Z736 793 aa24.33■■□□□ 1.49
HDAC4-209ENST00000487617 SOCS4Q8WXH5 440 aa24.33■■□□□ 1.49
HDAC4-209ENST00000487617 RNF208Q9H0X6 261 aa24.33■■□□□ 1.49
HDAC4-209ENST00000487617 FLOT1O75955 427 aa24.32■■□□□ 1.48
HDAC4-209ENST00000487617 NYAP2Q9P242 653 aa24.32■■□□□ 1.48
HDAC4-209ENST00000487617 SDSP20132 328 aa24.31■■□□□ 1.48
HDAC4-209ENST00000487617 CYP2B6P20813 491 aa24.31■■□□□ 1.48
HDAC4-209ENST00000487617 DSG3P32926 999 aa24.31■■□□□ 1.48
HDAC4-209ENST00000487617 WDR78Q5VTH9 848 aa24.31■■□□□ 1.48
HDAC4-209ENST00000487617 SAMD1Q6SPF0 538 aaPredicted RBP24.31■■□□□ 1.48
HDAC4-209ENST00000487617 UNC93B1Q9H1C4 597 aa24.31■■□□□ 1.48
HDAC4-209ENST00000487617 RBBP6Q7Z6E9 1792 aaKnown RBP24.31■■□□□ 1.48
HDAC4-209ENST00000487617 CENPFP49454 3210 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 IGKV6D-41A0A0C4DH26 115 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 GJB1P08034 283 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 TSPY3P0CV98 308 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 TSPY8P0CW00 308 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 ZNF589Q86UQ0 364 aaPredicted RBP24.3■■□□□ 1.48
HDAC4-209ENST00000487617 CLIP2Q9UDT6 1046 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 DOCK3Q8IZD9 2030 aa24.3■■□□□ 1.48
HDAC4-209ENST00000487617 HMGCRP04035 888 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 CTDSPL2Q05D32 466 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 ALX1Q15699 326 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 FAM47AQ5JRC9 791 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 MB21D1Q8N884 522 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 NKX2-3Q8TAU0 364 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 ATG4CQ96DT6 458 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 CEP95Q96GE4 821 aa24.29■■□□□ 1.48
HDAC4-209ENST00000487617 RGS2P41220 211 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 TFAP4Q01664 338 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 MORN1Q5T089 497 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 FAM83BQ5T0W9 1011 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 NEDD1Q8NHV4 660 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 MTMR4Q9NYA4 1195 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 CCDC171Q6TFL3 1326 aa24.28■■□□□ 1.48
HDAC4-209ENST00000487617 HSPD1P10809 573 aaKnown RBP24.27■■□□□ 1.48
HDAC4-209ENST00000487617 XRCC5P13010 732 aaKnown RBP24.27■■□□□ 1.48
HDAC4-209ENST00000487617 PDE4AP27815 886 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 GJA8P48165 433 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 USP6NLQ92738 828 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 MOV10L1Q9BXT6 1211 aaKnown RBP24.27■■□□□ 1.48
HDAC4-209ENST00000487617 SPATC1LQ9H0A9 340 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 DIAPH3Q9NSV4 1193 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 FBXO28Q9NVF7 368 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 ANAPC4Q9UJX5 808 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.27■■□□□ 1.48
HDAC4-209ENST00000487617 IVNS1ABPQ9Y6Y0 642 aa24.27■■□□□ 1.48
HDAC4-209ENST00000487617 GREB1LQ9C091 1923 aaPredicted RBP24.26■■□□□ 1.47
HDAC4-209ENST00000487617 F5H6K3 240 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 TTLL1O95922 423 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 FGAP02671 866 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 PTPREP23469 700 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 MFAP1P55081 439 aaKnown RBP24.26■■□□□ 1.47
HDAC4-209ENST00000487617 KLRC3Q07444 240 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 PLS1Q14651 629 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 U2AF1L4Q8WU68 220 aaKnown RBP24.26■■□□□ 1.47
HDAC4-209ENST00000487617 TRIB2Q92519 343 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 SHISA4Q96DD7 197 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 NUP88Q99567 741 aaPredicted RBP24.26■■□□□ 1.47
HDAC4-209ENST00000487617 INCENPQ9NQS7 918 aa24.26■■□□□ 1.47
HDAC4-209ENST00000487617 PLIN4Q96Q06 1357 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms