RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 NUCB1Q02818 461 aa21.07■□□□□ 0.96
COL6A1-204ENST00000486023 POTEEQ6S8J3 1075 aa21.07■□□□□ 0.96
COL6A1-204ENST00000486023 GTF3C2Q8WUA4 911 aaPredicted RBP21.07■□□□□ 0.96
COL6A1-204ENST00000486023 KANSL2Q9H9L4 492 aa21.07■□□□□ 0.96
COL6A1-204ENST00000486023 RASA1P20936 1047 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 IRF5Q13568 498 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 COG2Q14746 738 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 UNC93B1Q9H1C4 597 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 VCPKMTQ9H867 229 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 GJD2Q9UKL4 321 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 TMX2Q9Y320 296 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 RABGAP1Q9Y3P9 1069 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 TNRC18O15417 2968 aaPredicted RBP21.06■□□□□ 0.96
COL6A1-204ENST00000486023 MYH7P12883 1935 aa21.06■□□□□ 0.96
COL6A1-204ENST00000486023 CNMDO75829 334 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 MAPK4P31152 587 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 FAM227BQ96M60 508 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 NUDT12Q9BQG2 462 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 HOXC10Q9NYD6 342 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 BTBD7Q9P203 1132 aa21.05■□□□□ 0.96
COL6A1-204ENST00000486023 SPDYE16A6NNV3 312 aaPredicted RBP21.04■□□□□ 0.96
COL6A1-204ENST00000486023 FLOT1O75955 427 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 SLC3A2P08195 630 aaKnown RBP21.04■□□□□ 0.96
COL6A1-204ENST00000486023 CCNA1P78396 465 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 PLS1Q14651 629 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 VPS53Q5VIR6 699 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 GPR142Q7Z601 462 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 PLEKHH3Q7Z736 793 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 PLEKHM2Q8IWE5 1019 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 PXYLP1Q8TE99 480 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.04■□□□□ 0.96
COL6A1-204ENST00000486023 ZNF287Q9HBT7 754 aa21.04■□□□□ 0.96
COL6A1-204ENST00000486023 CTDSPL2Q05D32 466 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 PPARAQ07869 468 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 NMIQ13287 307 aaPredicted RBP21.03■□□□□ 0.96
COL6A1-204ENST00000486023 FAM47AQ5JRC9 791 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 LPAR1Q92633 364 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 GOPCQ9HD26 462 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 HELLSQ9NRZ9 838 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 CLIP2Q9UDT6 1046 aa21.03■□□□□ 0.96
COL6A1-204ENST00000486023 A0A0D9SFI3 127 aa21.02■□□□□ 0.96
COL6A1-204ENST00000486023 PDE4BQ07343 736 aa21.02■□□□□ 0.96
COL6A1-204ENST00000486023 TRIM32Q13049 653 aa21.02■□□□□ 0.96
COL6A1-204ENST00000486023 CHMP4CQ96CF2 233 aa21.02■□□□□ 0.96
COL6A1-204ENST00000486023 INCENPQ9NQS7 918 aa21.02■□□□□ 0.96
COL6A1-204ENST00000486023 KIAA0100Q14667 2235 aaKnown RBP21.02■□□□□ 0.96
COL6A1-204ENST00000486023 TFRCP02786 760 aaKnown RBP21.01■□□□□ 0.95
COL6A1-204ENST00000486023 TSPY3P0CV98 308 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 TSPY8P0CW00 308 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 MCMDC2Q4G0Z9 681 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 SOCS4Q8WXH5 440 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 ATG4CQ96DT6 458 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 DEFB118Q96PH6 123 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 NUP88Q99567 741 aaPredicted RBP21.01■□□□□ 0.95
COL6A1-204ENST00000486023 ISY1Q9ULR0 285 aaKnown RBP21.01■□□□□ 0.95
COL6A1-204ENST00000486023 IVNS1ABPQ9Y6Y0 642 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 BRCA2P51587 3418 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 MGAMO43451 1857 aa21.01■□□□□ 0.95
COL6A1-204ENST00000486023 WDR46O15213 610 aaKnown RBP21■□□□□ 0.95
COL6A1-204ENST00000486023 HMGCRP04035 888 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 GJB1P08034 283 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 DSG3P32926 999 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 TFAP4Q01664 338 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 FAM83BQ5T0W9 1011 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 NKX2-3Q8TAU0 364 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 TOMM22Q9NS69 142 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 FBXO28Q9NVF7 368 aa21■□□□□ 0.95
COL6A1-204ENST00000486023 F5H6K3 240 aa20.99■□□□□ 0.95
COL6A1-204ENST00000486023 RGS2P41220 211 aa20.99■□□□□ 0.95
COL6A1-204ENST00000486023 KLRC3Q07444 240 aa20.99■□□□□ 0.95
COL6A1-204ENST00000486023 LBX2Q6XYB7 198 aa20.99■□□□□ 0.95
COL6A1-204ENST00000486023 U2AF1L4Q8WU68 220 aaKnown RBP20.99■□□□□ 0.95
COL6A1-204ENST00000486023 TRIB2Q92519 343 aa20.99■□□□□ 0.95
COL6A1-204ENST00000486023 MOV10L1Q9BXT6 1211 aaKnown RBP20.99■□□□□ 0.95
COL6A1-204ENST00000486023 ROBO3Q96MS0 1386 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 FOXP2O15409 715 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 ZKSCAN1P17029 563 aaPredicted RBP20.98■□□□□ 0.95
COL6A1-204ENST00000486023 SDSP20132 328 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 GJA8P48165 433 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 CCL14Q16627 93 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 CWC27Q6UX04 472 aaKnown RBP20.98■□□□□ 0.95
COL6A1-204ENST00000486023 ZNF589Q86UQ0 364 aaPredicted RBP20.98■□□□□ 0.95
COL6A1-204ENST00000486023 NCAPG2Q86XI2 1143 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 SHISA4Q96DD7 197 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 CEP95Q96GE4 821 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 SPATC1LQ9H0A9 340 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 NYAP2Q9P242 653 aa20.98■□□□□ 0.95
COL6A1-204ENST00000486023 RANBP6O60518 1105 aaKnown RBP20.97■□□□□ 0.95
COL6A1-204ENST00000486023 SGPL1O95470 568 aa20.97■□□□□ 0.95
COL6A1-204ENST00000486023 PTPREP23469 700 aa20.97■□□□□ 0.95
COL6A1-204ENST00000486023 SLC4A3P48751 1232 aa20.97■□□□□ 0.95
COL6A1-204ENST00000486023 RRP12Q5JTH9 1297 aaKnown RBP20.97■□□□□ 0.95
COL6A1-204ENST00000486023 MORN1Q5T089 497 aa20.97■□□□□ 0.95
COL6A1-204ENST00000486023 LRRC47Q8N1G4 583 aaKnown RBP20.97■□□□□ 0.95
COL6A1-204ENST00000486023 OSBPL3Q9H4L5 887 aa20.97■□□□□ 0.95
COL6A1-204ENST00000486023 HMX1Q9NP08 348 aaPredicted RBP20.97■□□□□ 0.95
COL6A1-204ENST00000486023 TSPY2A6NKD2 308 aa20.96■□□□□ 0.95
COL6A1-204ENST00000486023 NDUFB10O96000 172 aa20.96■□□□□ 0.95
COL6A1-204ENST00000486023 FGAP02671 866 aa20.96■□□□□ 0.95
COL6A1-204ENST00000486023 PRKAR2AP13861 404 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms