RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 TMEM179Q6ZVK1 233 aa23.22■■□□□ 1.31
COL27A1-205ENST00000485397 CLEC10AQ8IUN9 316 aa23.22■■□□□ 1.31
COL27A1-205ENST00000485397 NPLOC4Q8TAT6 608 aa23.22■■□□□ 1.31
COL27A1-205ENST00000485397 A0A1W2PPC1 479 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 SMARCA5O60264 1052 aaPredicted RBP23.21■■□□□ 1.31
COL27A1-205ENST00000485397 SYN1P17600 705 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 GRB14Q14449 540 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 MFSD14CQ5VZR4 134 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 SIAH1Q8IUQ4 282 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 GDF15Q99988 308 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 TANGO6Q9C0B7 1094 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.21■■□□□ 1.31
COL27A1-205ENST00000485397 ATP8A2Q9NTI2 1148 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 IVNS1ABPQ9Y6Y0 642 aa23.21■■□□□ 1.31
COL27A1-205ENST00000485397 SOX1O00570 391 aaPredicted RBP23.2■■□□□ 1.3
COL27A1-205ENST00000485397 COL6A1P12109 1028 aa23.2■■□□□ 1.3
COL27A1-205ENST00000485397 MOV10L1Q9BXT6 1211 aaKnown RBP23.2■■□□□ 1.3
COL27A1-205ENST00000485397 HOXC10Q9NYD6 342 aa23.2■■□□□ 1.3
COL27A1-205ENST00000485397 RANBP2P49792 3224 aaKnown RBP23.19■■□□□ 1.3
COL27A1-205ENST00000485397 USP17L12C9JPN9 530 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 USP17L21D6R901 530 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 HOXC6P09630 235 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 ATP2B2Q01814 1243 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 UBE3CQ15386 1083 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 C12orf60Q5U649 245 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 LRRCC1Q9C099 1032 aa23.19■■□□□ 1.3
COL27A1-205ENST00000485397 CYP2C19P33261 490 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 CDK8P49336 464 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 ICA1Q05084 483 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 SPICE1Q8N0Z3 855 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 LRCH3Q96II8 777 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 SPATC1LQ9H0A9 340 aa23.18■■□□□ 1.3
COL27A1-205ENST00000485397 DSG3P32926 999 aa23.17■■□□□ 1.3
COL27A1-205ENST00000485397 BMP8BP34820 402 aa23.17■■□□□ 1.3
COL27A1-205ENST00000485397 PUS7LQ9H0K6 701 aaKnown RBP23.17■■□□□ 1.3
COL27A1-205ENST00000485397 ARHGEF10LQ9HCE6 1279 aa23.17■■□□□ 1.3
COL27A1-205ENST00000485397 TMX2Q9Y320 296 aa23.17■■□□□ 1.3
COL27A1-205ENST00000485397 SLC4A4Q9Y6R1 1079 aa23.17■■□□□ 1.3
COL27A1-205ENST00000485397 BAZ2AQ9UIF9 1905 aaKnown RBP23.16■■□□□ 1.3
COL27A1-205ENST00000485397 ERCC3P19447 782 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 CNGA1P29973 690 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 MAGEA10P43363 369 aaPredicted RBP23.16■■□□□ 1.3
COL27A1-205ENST00000485397 LRRC26Q2I0M4 334 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 DPP9Q86TI2 863 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 TRPV1Q8NER1 839 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 LPAR1Q92633 364 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 ATG4CQ96DT6 458 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 CCDC17Q96LX7 622 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 VCPKMTQ9H867 229 aa23.16■■□□□ 1.3
COL27A1-205ENST00000485397 DDX20Q9UHI6 824 aaKnown RBP23.16■■□□□ 1.3
COL27A1-205ENST00000485397 SZT2Q5T011 3432 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 FLOT1O75955 427 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 IGHA2P01877 340 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 ADORA2AP29274 412 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 SAMD1Q6SPF0 538 aaPredicted RBP23.15■■□□□ 1.3
COL27A1-205ENST00000485397 C16orf86Q6ZW13 317 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 AMOTL1Q8IY63 956 aa23.15■■□□□ 1.3
COL27A1-205ENST00000485397 RLFQ13129 1914 aa23.14■■□□□ 1.3
COL27A1-205ENST00000485397 PLS1Q14651 629 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 ZSCAN25Q6NSZ9 544 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 CTR9Q6PD62 1173 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 SHCBP1Q8NEM2 672 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 DDRGK1Q96HY6 314 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 SH2D4AQ9H788 454 aa23.14■■□□□ 1.29
COL27A1-205ENST00000485397 STRNO43815 780 aa23.13■■□□□ 1.29
COL27A1-205ENST00000485397 COBLO75128 1261 aa23.13■■□□□ 1.29
COL27A1-205ENST00000485397 EEF2P13639 858 aaKnown RBP23.13■■□□□ 1.29
COL27A1-205ENST00000485397 MB21D1Q8N884 522 aa23.13■■□□□ 1.29
COL27A1-205ENST00000485397 ECHDC1Q9NTX5 307 aa23.13■■□□□ 1.29
COL27A1-205ENST00000485397 WDR46O15213 610 aaKnown RBP23.12■■□□□ 1.29
COL27A1-205ENST00000485397 CYBAP13498 195 aa23.12■■□□□ 1.29
COL27A1-205ENST00000485397 NCAPG2Q86XI2 1143 aa23.12■■□□□ 1.29
COL27A1-205ENST00000485397 SENP6Q9GZR1 1112 aaPredicted RBP23.12■■□□□ 1.29
COL27A1-205ENST00000485397 MYH8P13535 1937 aa23.12■■□□□ 1.29
COL27A1-205ENST00000485397 A0A0G2JMZ2 1700 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 MSCO60682 206 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 OLFML2BQ68BL8 750 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 STRBPQ96SI9 672 aaKnown RBP23.11■■□□□ 1.29
COL27A1-205ENST00000485397 MROH8Q9H579 483 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 KANSL2Q9H9L4 492 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 FBXO28Q9NVF7 368 aa23.11■■□□□ 1.29
COL27A1-205ENST00000485397 FRMPD3Q5JV73 1810 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 TMEM132BQ14DG7 1078 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 ANO1Q5XXA6 986 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 TSHZ3Q63HK5 1081 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 STK11IPQ8N1F8 1099 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.1■■□□□ 1.29
COL27A1-205ENST00000485397 UBE2OQ9C0C9 1292 aaKnown RBP23.1■■□□□ 1.29
COL27A1-205ENST00000485397 MYH7P12883 1935 aa23.1■■□□□ 1.29
COL27A1-205ENST00000485397 ATN1P54259 1190 aaPredicted RBP23.09■■□□□ 1.29
COL27A1-205ENST00000485397 DCTPP1Q9H773 170 aa23.09■■□□□ 1.29
COL27A1-205ENST00000485397 ARPP21Q9UBL0 812 aaPredicted RBP23.09■■□□□ 1.29
COL27A1-205ENST00000485397 ZNF236Q9UL36 1845 aa23.08■■□□□ 1.29
COL27A1-205ENST00000485397 GSG1L2A8MUP6 293 aa23.08■■□□□ 1.29
COL27A1-205ENST00000485397 MDM2Q00987 491 aaPredicted RBP23.08■■□□□ 1.29
COL27A1-205ENST00000485397 PRAMEF19Q5SWL8 479 aa23.08■■□□□ 1.29
COL27A1-205ENST00000485397 GJC2Q5T442 439 aaPredicted RBP23.08■■□□□ 1.29
COL27A1-205ENST00000485397 TDHQ8IZJ6 230 aa23.08■■□□□ 1.29
COL27A1-205ENST00000485397 ABRAQ8N0Z2 381 aa23.08■■□□□ 1.29
COL27A1-205ENST00000485397 KBTBD3Q8NAB2 608 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms