RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 B4GALNT3Q6L9W6 998 aa26■■□□□ 1.75
COL9A3-211ENST00000477612 NACAP1Q9BZK3 213 aa26■■□□□ 1.75
COL9A3-211ENST00000477612 A0A0G2JMZ2 1700 aa26■■□□□ 1.75
COL9A3-211ENST00000477612 MYH4Q9Y623 1939 aa25.99■■□□□ 1.75
COL9A3-211ENST00000477612 APPP05067 770 aa25.99■■□□□ 1.75
COL9A3-211ENST00000477612 MAPK4P31152 587 aa25.99■■□□□ 1.75
COL9A3-211ENST00000477612 CLEC10AQ8IUN9 316 aa25.99■■□□□ 1.75
COL9A3-211ENST00000477612 VCPKMTQ9H867 229 aa25.99■■□□□ 1.75
COL9A3-211ENST00000477612 SPDYE16A6NNV3 312 aaPredicted RBP25.98■■□□□ 1.75
COL9A3-211ENST00000477612 EEF2P13639 858 aaKnown RBP25.98■■□□□ 1.75
COL9A3-211ENST00000477612 COG2Q14746 738 aa25.98■■□□□ 1.75
COL9A3-211ENST00000477612 PLEKHM2Q8IWE5 1019 aa25.98■■□□□ 1.75
COL9A3-211ENST00000477612 MKNK2Q9HBH9 465 aa25.98■■□□□ 1.75
COL9A3-211ENST00000477612 HELLSQ9NRZ9 838 aa25.98■■□□□ 1.75
COL9A3-211ENST00000477612 HOXC10Q9NYD6 342 aa25.98■■□□□ 1.75
COL9A3-211ENST00000477612 FOXP2O15409 715 aa25.97■■□□□ 1.75
COL9A3-211ENST00000477612 PAGR1Q9BTK6 254 aa25.97■■□□□ 1.75
COL9A3-211ENST00000477612 PORCNQ9H237 461 aa25.97■■□□□ 1.75
COL9A3-211ENST00000477612 ZNF287Q9HBT7 754 aa25.97■■□□□ 1.75
COL9A3-211ENST00000477612 GJB1P08034 283 aa25.96■■□□□ 1.75
COL9A3-211ENST00000477612 CCL5P13501 91 aa25.96■■□□□ 1.75
COL9A3-211ENST00000477612 ELNP15502 786 aa25.96■■□□□ 1.75
COL9A3-211ENST00000477612 USP6NLQ92738 828 aa25.96■■□□□ 1.75
COL9A3-211ENST00000477612 IGKV6D-41A0A0C4DH26 115 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 WDR46O15213 610 aaKnown RBP25.95■■□□□ 1.74
COL9A3-211ENST00000477612 MYCP01106 439 aaPredicted RBP25.95■■□□□ 1.74
COL9A3-211ENST00000477612 CCNA1P78396 465 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 NKX2-3Q8TAU0 364 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 SOCS4Q8WXH5 440 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 NAPBQ9H115 298 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 BTBD7Q9P203 1132 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 NYAP2Q9P242 653 aa25.95■■□□□ 1.74
COL9A3-211ENST00000477612 BIN2Q9UBW5 565 aaPredicted RBP25.95■■□□□ 1.74
COL9A3-211ENST00000477612 COL11A1P12107 1806 aaPredicted RBP25.94■■□□□ 1.74
COL9A3-211ENST00000477612 INHAP05111 366 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 XRCC5P13010 732 aaKnown RBP25.94■■□□□ 1.74
COL9A3-211ENST00000477612 DSG3P32926 999 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 GJA8P48165 433 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 CCDC129Q6ZRS4 1044 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 GPR142Q7Z601 462 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 NUDT12Q9BQG2 462 aa25.94■■□□□ 1.74
COL9A3-211ENST00000477612 CAPN2P17655 700 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 PPARAQ07869 468 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 ALX1Q15699 326 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 MORN1Q5T089 497 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 PLEKHH3Q7Z736 793 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 ZNF444Q8N0Y2 327 aaPredicted RBP25.93■■□□□ 1.74
COL9A3-211ENST00000477612 RNF208Q9H0X6 261 aa25.93■■□□□ 1.74
COL9A3-211ENST00000477612 PDE4BQ07343 736 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 MCMDC2Q4G0Z9 681 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 STK11IPQ8N1F8 1099 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 MB21D1Q8N884 522 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 SHISA4Q96DD7 197 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 TANGO6Q9C0B7 1094 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 UNC93B1Q9H1C4 597 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 GOPCQ9HD26 462 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 PLIN4Q96Q06 1357 aa25.92■■□□□ 1.74
COL9A3-211ENST00000477612 TRIM6-TRIM34B2RNG4 842 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 HMGCRP04035 888 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 SLC3A2P08195 630 aaKnown RBP25.91■■□□□ 1.74
COL9A3-211ENST00000477612 CCAR1Q8IX12 1150 aaKnown RBP25.91■■□□□ 1.74
COL9A3-211ENST00000477612 SPICE1Q8N0Z3 855 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 MKL1Q969V6 931 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 FAM227BQ96M60 508 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 ANAPC4Q9UJX5 808 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 SYNPO2Q9UMS6 1093 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 ADAMTS5Q9UNA0 930 aa25.91■■□□□ 1.74
COL9A3-211ENST00000477612 ZNFX1Q9P2E3 1918 aaKnown RBP25.9■■□□□ 1.74
COL9A3-211ENST00000477612 A0A0D9SFI3 127 aa25.9■■□□□ 1.74
COL9A3-211ENST00000477612 VPS53Q5VIR6 699 aa25.9■■□□□ 1.74
COL9A3-211ENST00000477612 NEDD1Q8NHV4 660 aa25.9■■□□□ 1.74
COL9A3-211ENST00000477612 PAK6Q9NQU5 681 aaPredicted RBP25.9■■□□□ 1.74
COL9A3-211ENST00000477612 ZNF236Q9UL36 1845 aa25.89■■□□□ 1.74
COL9A3-211ENST00000477612 PRDM1O75626 825 aa25.89■■□□□ 1.74
COL9A3-211ENST00000477612 CYP2B6P20813 491 aa25.89■■□□□ 1.74
COL9A3-211ENST00000477612 ATP2B2Q01814 1243 aa25.89■■□□□ 1.74
COL9A3-211ENST00000477612 TRMT44Q8IYL2 757 aaKnown RBP25.89■■□□□ 1.74
COL9A3-211ENST00000477612 RILPL2Q969X0 211 aa25.89■■□□□ 1.74
COL9A3-211ENST00000477612 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.89■■□□□ 1.74
COL9A3-211ENST00000477612 FLOT1O75955 427 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 SGPL1O95470 568 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 PTPREP23469 700 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 RGS2P41220 211 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 NMIQ13287 307 aaPredicted RBP25.88■■□□□ 1.73
COL9A3-211ENST00000477612 SHCBP1Q8NEM2 672 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 U2AF1L4Q8WU68 220 aaKnown RBP25.88■■□□□ 1.73
COL9A3-211ENST00000477612 TRIB2Q92519 343 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 MTMR4Q9NYA4 1195 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 ZMYM6O95789 1325 aa25.88■■□□□ 1.73
COL9A3-211ENST00000477612 SLC15A5A6NIM6 579 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 FGRP09769 529 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 SDSP20132 328 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 MAP2K5Q13163 448 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 ATG4CQ96DT6 458 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 CEP95Q96GE4 821 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 MOV10L1Q9BXT6 1211 aaKnown RBP25.87■■□□□ 1.73
COL9A3-211ENST00000477612 SPATC1LQ9H0A9 340 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 RPTORQ8N122 1335 aa25.87■■□□□ 1.73
COL9A3-211ENST00000477612 F5H6K3 240 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 FGAP02671 866 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms