RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 CAVIN1Q6NZI2 390 aaKnown RBP21.94■■□□□ 1.1
SMC4-209ENST00000468653 TATDN1Q6P1N9 297 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 METTL16Q86W50 562 aaKnown RBP21.94■■□□□ 1.1
SMC4-209ENST00000468653 LEO1Q8WVC0 666 aaPredicted RBP21.94■■□□□ 1.1
SMC4-209ENST00000468653 DPF2Q92785 391 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 RBM27Q9P2N5 1060 aaKnown RBP21.94■■□□□ 1.1
SMC4-209ENST00000468653 SIPA1L1O43166 1804 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 ELP1O95163 1332 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 KIF28PB7ZC32 967 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 PARP1P09874 1014 aaKnown RBP21.94■■□□□ 1.1
SMC4-209ENST00000468653 LZTS2Q9BRK4 669 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 KCNJ14Q9UNX9 436 aa21.94■■□□□ 1.1
SMC4-209ENST00000468653 PALM3A6NDB9 673 aaPredicted RBP21.93■■□□□ 1.1
SMC4-209ENST00000468653 MMP1P03956 469 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 LMNB1P20700 586 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 CEBPZQ03701 1054 aaKnown RBP21.93■■□□□ 1.1
SMC4-209ENST00000468653 FAM83AQ86UY5 434 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 CLEC10AQ8IUN9 316 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 MICALL2Q8IY33 904 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 PIBF1Q8WXW3 757 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.93■■□□□ 1.14e-34■■■■■ 131.8
SMC4-209ENST00000468653 HERC5Q9UII4 1024 aaKnown RBP21.93■■□□□ 1.1
SMC4-209ENST00000468653 CNTNAP1P78357 1384 aa21.93■■□□□ 1.1
SMC4-209ENST00000468653 ATP2B2Q01814 1243 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 LRRC47Q8N1G4 583 aaKnown RBP21.92■■□□□ 1.1
SMC4-209ENST00000468653 USP28Q96RU2 1077 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 SYT17Q9BSW7 474 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 CNOT7Q9UIV1 285 aaKnown RBP21.92■■□□□ 1.1
SMC4-209ENST00000468653 MYH6P13533 1939 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 ZNF541Q9H0D2 1346 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 KLRF2D3W0D1 207 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 GOLGA8HP0CJ92 632 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 MYSM1Q5VVJ2 828 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 USP17L2Q6R6M4 530 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 ILDR2Q71H61 639 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 VPS54Q9P1Q0 977 aa21.92■■□□□ 1.1
SMC4-209ENST00000468653 GOLGA6L4A6NEF3 574 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 SCG2P13521 617 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 U2AF2P26368 475 aaKnown RBP eCLIP21.91■■□□□ 1.16e-7■■■■■ 34.1
SMC4-209ENST00000468653 TNNI2P48788 182 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 ABCB5Q2M3G0 1257 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 TMEM179Q6ZVK1 233 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 DIS3L2Q8IYB7 885 aaKnown RBP21.91■■□□□ 1.1
SMC4-209ENST00000468653 KANSL2Q9H9L4 492 aa21.91■■□□□ 1.1
SMC4-209ENST00000468653 PFKFB3Q16875 520 aaPredicted RBP21.9■■□□□ 1.1
SMC4-209ENST00000468653 FTOQ9C0B1 505 aaKnown RBP eCLIP21.9■■□□□ 1.1
SMC4-209ENST00000468653 TMEM39BQ9GZU3 492 aa21.9■■□□□ 1.1
SMC4-209ENST00000468653 MYH15Q9Y2K3 1946 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 USP17L5A8MUK1 530 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 GDF11O95390 407 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 PDHBP11177 359 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 RASGRP2Q7LDG7 609 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 FOXP1Q9H334 677 aaPredicted RBP21.89■■□□□ 1.1
SMC4-209ENST00000468653 CABP5Q9NP86 173 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 RCOR1Q9UKL0 485 aa21.89■■□□□ 1.1
SMC4-209ENST00000468653 BTBD18B2RXH4 712 aa21.89■■□□□ 1.09
SMC4-209ENST00000468653 EGFRP00533 1210 aa21.89■■□□□ 1.09
SMC4-209ENST00000468653 TBC1D10BQ4KMP7 808 aaPredicted RBP21.89■■□□□ 1.09
SMC4-209ENST00000468653 SAMD7Q7Z3H4 446 aa21.89■■□□□ 1.09
SMC4-209ENST00000468653 SYAP1Q96A49 352 aaPredicted RBP21.89■■□□□ 1.09
SMC4-209ENST00000468653 RTEL1Q9NZ71 1219 aa21.89■■□□□ 1.09
SMC4-209ENST00000468653 H7C1D1 291 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 TNFAIP1Q13829 316 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 SEPT2Q15019 361 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 SHROOM1Q2M3G4 852 aaPredicted RBP21.88■■□□□ 1.09
SMC4-209ENST00000468653 ASPRV1Q53RT3 343 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 NOSTRINQ8IVI9 506 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 PHF20Q9BVI0 1012 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 SPZ1Q9BXG8 430 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 NYAP2Q9P242 653 aa21.88■■□□□ 1.09
SMC4-209ENST00000468653 GREB1LQ9C091 1923 aaPredicted RBP21.88■■□□□ 1.09
SMC4-209ENST00000468653 BAZ2BQ9UIF8 2168 aaKnown RBP21.88■■□□□ 1.09
SMC4-209ENST00000468653 CYTH3O43739 400 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 EEF2P13639 858 aaKnown RBP21.87■■□□□ 1.09
SMC4-209ENST00000468653 ICA1Q05084 483 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 KIF4BQ2VIQ3 1234 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 BRMS1Q9HCU9 246 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 FRMPD2Q68DX3 1309 aaPredicted RBP21.87■■□□□ 1.09
SMC4-209ENST00000468653 GH2P01242 217 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 SMARCA1P28370 1054 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 SLC35G1Q2M3R5 365 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 SHISA4Q96DD7 197 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 POLR3EQ9NVU0 708 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 TMEM63CQ9P1W3 806 aa21.87■■□□□ 1.09
SMC4-209ENST00000468653 TBC1D12O60347 775 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 SNHG28P0DPA3 235 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 KRT2P35908 639 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 NLRP5P59047 1200 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 RASA3Q14644 834 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 STK38Q15208 465 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 GPC2Q8N158 579 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 MKL1Q969V6 931 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 CLIC4Q9Y696 253 aa21.86■■□□□ 1.09
SMC4-209ENST00000468653 ZSCAN23Q3MJ62 389 aa21.85■■□□□ 1.09
SMC4-209ENST00000468653 ANO1Q5XXA6 986 aa21.85■■□□□ 1.09
SMC4-209ENST00000468653 RRP36Q96EU6 259 aaKnown RBP21.85■■□□□ 1.09
SMC4-209ENST00000468653 CPVLQ9H3G5 476 aa21.85■■□□□ 1.09
SMC4-209ENST00000468653 GPCPD1Q9NPB8 672 aa21.85■■□□□ 1.09
SMC4-209ENST00000468653 SH3GLB2Q9NR46 395 aa21.85■■□□□ 1.09
SMC4-209ENST00000468653 RAD21O60216 631 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms