RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LPAR1Q92633 364 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 NACAP1Q9BZK3 213 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 RNF208Q9H0X6 261 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 KANSL2Q9H9L4 492 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 MKNK2Q9HBH9 465 aa25.37■■□□□ 1.65
HMGB3-205ENST00000455596 PDE4DIPQ5VU43 2346 aa25.36■■□□□ 1.65
HMGB3-205ENST00000455596 COL11A1P12107 1806 aaPredicted RBP25.36■■□□□ 1.65
HMGB3-205ENST00000455596 IGHDP01880 384 aa25.36■■□□□ 1.65
HMGB3-205ENST00000455596 INHAP05111 366 aa25.36■■□□□ 1.65
HMGB3-205ENST00000455596 TANGO6Q9C0B7 1094 aa25.36■■□□□ 1.65
HMGB3-205ENST00000455596 VCPKMTQ9H867 229 aa25.36■■□□□ 1.65
HMGB3-205ENST00000455596 SPDYE16A6NNV3 312 aaPredicted RBP25.35■■□□□ 1.65
HMGB3-205ENST00000455596 CNMDO75829 334 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 EEF2P13639 858 aaKnown RBP25.35■■□□□ 1.65
HMGB3-205ENST00000455596 CCNA1P78396 465 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 SOCS4Q8WXH5 440 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 NUDT12Q9BQG2 462 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 PORCNQ9H237 461 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 ZNF287Q9HBT7 754 aa25.35■■□□□ 1.65
HMGB3-205ENST00000455596 GJB1P08034 283 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 RASA1P20936 1047 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 ATP2B2Q01814 1243 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 COG2Q14746 738 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 KIAA1755Q5JYT7 1200 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 CHD1LQ86WJ1 897 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 NAPBQ9H115 298 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 UNC93B1Q9H1C4 597 aa25.34■■□□□ 1.65
HMGB3-205ENST00000455596 CWC22Q9HCG8 908 aaKnown RBP25.34■■□□□ 1.65
HMGB3-205ENST00000455596 GJA8P48165 433 aa25.33■■□□□ 1.65
HMGB3-205ENST00000455596 GPR142Q7Z601 462 aa25.33■■□□□ 1.65
HMGB3-205ENST00000455596 HOXC10Q9NYD6 342 aa25.33■■□□□ 1.65
HMGB3-205ENST00000455596 WDR46O15213 610 aaKnown RBP25.32■■□□□ 1.64
HMGB3-205ENST00000455596 HMGCRP04035 888 aa25.32■■□□□ 1.64
HMGB3-205ENST00000455596 CYP2B6P20813 491 aa25.32■■□□□ 1.64
HMGB3-205ENST00000455596 PLEKHH3Q7Z736 793 aa25.32■■□□□ 1.64
HMGB3-205ENST00000455596 SPICE1Q8N0Z3 855 aa25.32■■□□□ 1.64
HMGB3-205ENST00000455596 BTBD7Q9P203 1132 aa25.32■■□□□ 1.64
HMGB3-205ENST00000455596 NUCB1Q02818 461 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 CCDC129Q6ZRS4 1044 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 TICAM2Q86XR7 235 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 ZNF444Q8N0Y2 327 aaPredicted RBP25.31■■□□□ 1.64
HMGB3-205ENST00000455596 SHISA4Q96DD7 197 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.31■■□□□ 1.64
HMGB3-205ENST00000455596 GOPCQ9HD26 462 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 HELLSQ9NRZ9 838 aa25.31■■□□□ 1.64
HMGB3-205ENST00000455596 TRIM6-TRIM34B2RNG4 842 aa25.3■■□□□ 1.64
HMGB3-205ENST00000455596 SLC3A2P08195 630 aaKnown RBP25.3■■□□□ 1.64
HMGB3-205ENST00000455596 XRCC5P13010 732 aaKnown RBP25.3■■□□□ 1.64
HMGB3-205ENST00000455596 PRPF38BQ5VTL8 546 aaKnown RBP25.3■■□□□ 1.64
HMGB3-205ENST00000455596 FLOT1O75955 427 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 DSG3P32926 999 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 RGS2P41220 211 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 PDE4BQ07343 736 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 PPARAQ07869 468 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 MORN1Q5T089 497 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 WDR78Q5VTH9 848 aa25.29■■□□□ 1.64
HMGB3-205ENST00000455596 U2AF1L4Q8WU68 220 aaKnown RBP25.29■■□□□ 1.64
HMGB3-205ENST00000455596 ZNFX1Q9P2E3 1918 aaKnown RBP25.29■■□□□ 1.64
HMGB3-205ENST00000455596 ZNF236Q9UL36 1845 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 PRDM1O75626 825 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 SGPL1O95470 568 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 PLEKHM2Q8IWE5 1019 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 TRMT44Q8IYL2 757 aaKnown RBP25.28■■□□□ 1.64
HMGB3-205ENST00000455596 MB21D1Q8N884 522 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 TRIB2Q92519 343 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 USP6NLQ92738 828 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 RILPL2Q969X0 211 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 OSBPL3Q9H4L5 887 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 NYAP2Q9P242 653 aa25.28■■□□□ 1.64
HMGB3-205ENST00000455596 RAD21O60216 631 aa25.27■■□□□ 1.64
HMGB3-205ENST00000455596 PAK6Q9NQU5 681 aaPredicted RBP25.27■■□□□ 1.64
HMGB3-205ENST00000455596 IVNS1ABPQ9Y6Y0 642 aa25.27■■□□□ 1.64
HMGB3-205ENST00000455596 BRCA2P51587 3418 aa25.27■■□□□ 1.64
HMGB3-205ENST00000455596 CAPN2P17655 700 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 MAP2K5Q13163 448 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 MCMDC2Q4G0Z9 681 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 ATG4CQ96DT6 458 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 FAM227BQ96M60 508 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 DEFB118Q96PH6 123 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 APBA2Q99767 749 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.26■■□□□ 1.632e-6■■■■■ 36
HMGB3-205ENST00000455596 RPTORQ8N122 1335 aa25.26■■□□□ 1.63
HMGB3-205ENST00000455596 IGKV6D-41A0A0C4DH26 115 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 SLC15A5A6NIM6 579 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 FOXP2O15409 715 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 ZKSCAN1P17029 563 aaPredicted RBP25.25■■□□□ 1.63
HMGB3-205ENST00000455596 PTPREP23469 700 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 TRIM32Q13049 653 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 SAMD1Q6SPF0 538 aaPredicted RBP25.25■■□□□ 1.63
HMGB3-205ENST00000455596 SPATC1LQ9H0A9 340 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 HMX1Q9NP08 348 aaPredicted RBP25.25■■□□□ 1.63
HMGB3-205ENST00000455596 PLIN4Q96Q06 1357 aa25.25■■□□□ 1.63
HMGB3-205ENST00000455596 A0A0D9SFI3 127 aa25.24■■□□□ 1.63
HMGB3-205ENST00000455596 TSPY3P0CV98 308 aa25.24■■□□□ 1.63
HMGB3-205ENST00000455596 TSPY8P0CW00 308 aa25.24■■□□□ 1.63
HMGB3-205ENST00000455596 VPS53Q5VIR6 699 aa25.24■■□□□ 1.63
HMGB3-205ENST00000455596 MOV10L1Q9BXT6 1211 aaKnown RBP25.24■■□□□ 1.63
HMGB3-205ENST00000455596 CLIP2Q9UDT6 1046 aa25.24■■□□□ 1.63
HMGB3-205ENST00000455596 FRMPD3Q5JV73 1810 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 TFRCP02786 760 aaKnown RBP25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms