RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 RBPJLQ9UBG7 517 aa11.58□□□□□ -0.56
USP54-207ENST00000451492 ZNFX1Q9P2E3 1918 aaKnown RBP11.58□□□□□ -0.56
USP54-207ENST00000451492 ROBO3Q96MS0 1386 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 SPDYE16A6NNV3 312 aaPredicted RBP11.57□□□□□ -0.56
USP54-207ENST00000451492 CNMDO75829 334 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 EEF2P13639 858 aaKnown RBP11.57□□□□□ -0.56
USP54-207ENST00000451492 GNAT2P19087 354 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 TRIM32Q13049 653 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 ZMYM1Q5SVZ6 1142 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 POTEEQ6S8J3 1075 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 IFNL3Q8IZI9 196 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 GTF3C2Q8WUA4 911 aaPredicted RBP11.57□□□□□ -0.56
USP54-207ENST00000451492 SHISA4Q96DD7 197 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 NAPBQ9H115 298 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 SH2D4AQ9H788 454 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 LAMA4Q16363 1823 aa11.57□□□□□ -0.56
USP54-207ENST00000451492 PATL2C9JE40 543 aaKnown RBP11.56□□□□□ -0.56
USP54-207ENST00000451492 FLOT1O75955 427 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 RASA1P20936 1047 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 IRF5Q13568 498 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 PLS1Q14651 629 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 SBK1Q52WX2 424 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 GPR142Q7Z601 462 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 CHMP4CQ96CF2 233 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 EVI5LQ96CN4 794 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 CCDC17Q96LX7 622 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 NACAP1Q9BZK3 213 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 VCPKMTQ9H867 229 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 BTBD7Q9P203 1132 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 ALPK3Q96L96 1907 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 ZNF236Q9UL36 1845 aa11.56□□□□□ -0.56
USP54-207ENST00000451492 MAPK4P31152 587 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 CTDSPL2Q05D32 466 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 AAMPQ13685 434 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 GIMAP6Q6P9H5 292 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 PLEKHH3Q7Z736 793 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 SIAH1Q8IUQ4 282 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 PXYLP1Q8TE99 480 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 TRIB2Q92519 343 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 ATG4CQ96DT6 458 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 FAM227BQ96M60 508 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 NUDT12Q9BQG2 462 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 STAP2Q9UGK3 403 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 ISY1Q9ULR0 285 aaKnown RBP11.55□□□□□ -0.56
USP54-207ENST00000451492 TMX2Q9Y320 296 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 RABGAP1Q9Y3P9 1069 aa11.55□□□□□ -0.56
USP54-207ENST00000451492 PDE4DIPQ5VU43 2346 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 A0A0D9SFI3 127 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 HMGCRP04035 888 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 ZKSCAN1P17029 563 aaPredicted RBP11.54□□□□□ -0.56
USP54-207ENST00000451492 CCNA1P78396 465 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 NMIQ13287 307 aaPredicted RBP11.54□□□□□ -0.56
USP54-207ENST00000451492 CCL14Q16627 93 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 FAM47AQ5JRC9 791 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 FAM83BQ5T0W9 1011 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 VPS53Q5VIR6 699 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 CHD1LQ86WJ1 897 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 SMC5Q8IY18 1101 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 U2AF1L4Q8WU68 220 aaKnown RBP11.54□□□□□ -0.56
USP54-207ENST00000451492 SOCS4Q8WXH5 440 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 DEFB118Q96PH6 123 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 NUP88Q99567 741 aaPredicted RBP11.54□□□□□ -0.56
USP54-207ENST00000451492 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP54-207ENST00000451492 KANSL2Q9H9L4 492 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 GOPCQ9HD26 462 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 FBXO28Q9NVF7 368 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 GJD2Q9UKL4 321 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 IVNS1ABPQ9Y6Y0 642 aa11.54□□□□□ -0.56
USP54-207ENST00000451492 WDR46O15213 610 aaKnown RBP11.53□□□□□ -0.56
USP54-207ENST00000451492 TFRCP02786 760 aaKnown RBP11.53□□□□□ -0.56
USP54-207ENST00000451492 GJB1P08034 283 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 TSPY3P0CV98 308 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 TSPY8P0CW00 308 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 RGS2P41220 211 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 GJA8P48165 433 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 NUCB1Q02818 461 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 PDE4BQ07343 736 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 PPARAQ07869 468 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 COG2Q14746 738 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 PRPF38BQ5VTL8 546 aaKnown RBP11.53□□□□□ -0.56
USP54-207ENST00000451492 ZNF444Q8N0Y2 327 aaPredicted RBP11.53□□□□□ -0.56
USP54-207ENST00000451492 LRRC47Q8N1G4 583 aaKnown RBP11.53□□□□□ -0.56
USP54-207ENST00000451492 NKX2-3Q8TAU0 364 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 LPAR1Q92633 364 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 APBA2Q99767 749 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.53□□□□□ -0.56
USP54-207ENST00000451492 TOMM22Q9NS69 142 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 CLIP2Q9UDT6 1046 aa11.53□□□□□ -0.56
USP54-207ENST00000451492 FOXP2O15409 715 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 FARP2O94887 1054 aaPredicted RBP11.52□□□□□ -0.57
USP54-207ENST00000451492 SLC3A2P08195 630 aaKnown RBP11.52□□□□□ -0.57
USP54-207ENST00000451492 PRKAR2AP13861 404 aaKnown RBP11.52□□□□□ -0.57
USP54-207ENST00000451492 DSG3P32926 999 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 SLC4A3P48751 1232 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 LBX2Q6XYB7 198 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 ZNF589Q86UQ0 364 aaPredicted RBP11.52□□□□□ -0.57
USP54-207ENST00000451492 NCAPG2Q86XI2 1143 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 PLEKHM2Q8IWE5 1019 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 CEP95Q96GE4 821 aa11.52□□□□□ -0.57
USP54-207ENST00000451492 MOV10L1Q9BXT6 1211 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms