RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ERC2O15083 957 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 PLSCR1O15162 318 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 NTSR2O95665 410 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 U2AF2P26368 475 aaKnown RBP eCLIP10.77□□□□□ -0.692e-12■■□□□ 11.6
SNHG3-201ENST00000413987 RFX5P48382 616 aaPredicted RBP10.77□□□□□ -0.69
SNHG3-201ENST00000413987 EPHB1P54762 984 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 PTPN12Q05209 780 aaKnown RBP10.77□□□□□ -0.69
SNHG3-201ENST00000413987 TTF1Q15361 905 aaPredicted RBP10.77□□□□□ -0.69
SNHG3-201ENST00000413987 RABL6Q3YEC7 729 aaPredicted RBP10.77□□□□□ -0.69
SNHG3-201ENST00000413987 TMX3Q96JJ7 454 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 GREM2Q9H772 168 aa10.77□□□□□ -0.69
SNHG3-201ENST00000413987 CGNQ9P2M7 1197 aaKnown RBP10.77□□□□□ -0.69
SNHG3-201ENST00000413987 USP42Q9H9J4 1324 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 PRRT4C9JH25 899 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 RASA1P20936 1047 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 HLTFQ14527 1009 aaKnown RBP eCLIP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 ERFEQ4G0M1 354 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 KIAA0907Q7Z7F0 614 aaPredicted RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 DUSP9Q99956 384 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 PUS3Q9BZE2 481 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 LRRCC1Q9C099 1032 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 RAI14Q9P0K7 980 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 CNTN3Q9P232 1028 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 WDR33Q9C0J8 1336 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 COL4A1P02462 1669 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 SASH1O94885 1247 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 MX1P20591 662 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 ZBED6P86452 979 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 LRRC24Q50LG9 513 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 ZC3H12AQ5D1E8 599 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 SLF2Q8IX21 1173 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 RHPN1Q8TCX5 695 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 ATRIPQ8WXE1 791 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 UTP14AQ9BVJ6 771 aaKnown RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 PDGFDQ9GZP0 370 aaPredicted RBP10.76□□□□□ -0.69
SNHG3-201ENST00000413987 TMCC3Q9ULS5 477 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 SMC3Q9UQE7 1217 aa10.76□□□□□ -0.69
SNHG3-201ENST00000413987 USP17L3A6NCW0 530 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 USP17L4A6NCW7 530 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 FIBPO43427 364 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 PPFIA3O75145 1194 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 SCGB1D2O95969 90 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 KCNA2P16389 499 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 USP17L2Q6R6M4 530 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 USP17L1Q7RTZ2 530 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 SLC51AQ86UW1 340 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 OGFOD1Q8N543 542 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 SH3TC2Q8TF17 1288 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 ZNF652Q9Y2D9 606 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 ABCC12Q96J65 1359 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 TUBGCP6Q96RT7 1819 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 SH3TC1Q8TE82 1336 aa10.75□□□□□ -0.69
SNHG3-201ENST00000413987 LILRB3O75022 631 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 GYS1P13807 737 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SLC20A2Q08357 652 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 PODNQ7Z5L7 613 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 LCA5Q86VQ0 697 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 TTC30AQ86WT1 665 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 ZNF654Q8IZM8 581 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 TTLL11Q8NHH1 800 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 APPBP2Q92624 585 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 CD248Q9HCU0 757 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 KMT5AQ9NQR1 393 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SEC31BQ9NQW1 1179 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 TLR7Q9NYK1 1049 aaKnown RBP10.74□□□□□ -0.69
SNHG3-201ENST00000413987 LUZP4Q9P127 313 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SPTLC1O15269 473 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SDSP20132 328 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 NEK4P51957 841 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 CTSWP56202 376 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 NFX1Q12986 1120 aaKnown RBP10.74□□□□□ -0.69
SNHG3-201ENST00000413987 MORC3Q14149 939 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 NFIXQ14938 502 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 NYAP1Q6ZVC0 841 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 COL23A1Q86Y22 540 aaPredicted RBP10.74□□□□□ -0.69
SNHG3-201ENST00000413987 CAMKK2Q96RR4 588 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SETDB2Q96T68 719 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 GPHNQ9NQX3 736 aaPredicted RBP10.74□□□□□ -0.69
SNHG3-201ENST00000413987 IP6K2Q9UHH9 426 aa10.74□□□□□ -0.69
SNHG3-201ENST00000413987 MORC2Q9Y6X9 1032 aaPredicted RBP10.74□□□□□ -0.69
SNHG3-201ENST00000413987 SMTNL1A8MU46 457 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 ORC4O43929 436 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 ATF4P18848 351 aaPredicted RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 ITGA6P23229 1130 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 TFCP2Q12800 502 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 PTK7Q13308 1070 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 MYO1HQ8N1T3 1032 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 GPR101Q96P66 508 aaPredicted RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 SRRTQ9BXP5 876 aaKnown RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 CTNNA3Q9UI47 895 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 PAXBP1Q9Y5B6 917 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 DDX60Q8IY21 1712 aaKnown RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 TAF1P21675 1872 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 TRIM64CA6NLI5 447 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 PIK3CDO00329 1044 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 NAT1P18440 290 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 G3BP1Q13283 466 aaKnown RBP eCLIP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 FAM83BQ5T0W9 1011 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 SPICE1Q8N0Z3 855 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 CPXCR1Q8N123 301 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms