RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 TRMT44Q8IYL2 757 aaKnown RBP16.63■□□□□ 0.25
SEC13-204ENST00000397099 NAPBQ9H115 298 aa16.63■□□□□ 0.25
SEC13-204ENST00000397099 RPAP3Q9H6T3 665 aaPredicted RBP16.63■□□□□ 0.25
SEC13-204ENST00000397099 SYNPO2Q9UMS6 1093 aa16.63■□□□□ 0.25
SEC13-204ENST00000397099 DOCK3Q8IZD9 2030 aa16.63■□□□□ 0.25
SEC13-204ENST00000397099 CYP2D7A0A087X1C5 515 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 WDR46O15213 610 aaKnown RBP16.62■□□□□ 0.25
SEC13-204ENST00000397099 IGHDP01880 384 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 INHAP05111 366 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 ZNF444Q8N0Y2 327 aaPredicted RBP16.62■□□□□ 0.25
SEC13-204ENST00000397099 MB21D1Q8N884 522 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 VCPKMTQ9H867 229 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 GOPCQ9HD26 462 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 RBPJLQ9UBG7 517 aa16.62■□□□□ 0.25
SEC13-204ENST00000397099 GREB1LQ9C091 1923 aaPredicted RBP16.61■□□□□ 0.25
SEC13-204ENST00000397099 A0A1W2PRG0 241 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 TRIM6-TRIM34B2RNG4 842 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 HIP1O00291 1037 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 GJB1P08034 283 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 MCMDC2Q4G0Z9 681 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 B4GALNT3Q6L9W6 998 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 UNC93B1Q9H1C4 597 aa16.61■□□□□ 0.25
SEC13-204ENST00000397099 EPB41L4AQ9HCS5 686 aaPredicted RBP16.61■□□□□ 0.25
SEC13-204ENST00000397099 XRCC5P13010 732 aaKnown RBP16.6■□□□□ 0.25
SEC13-204ENST00000397099 GJA8P48165 433 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 EVX2Q03828 476 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 ALX1Q15699 326 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 SHISA4Q96DD7 197 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 NUDT12Q9BQG2 462 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 TANGO6Q9C0B7 1094 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 CWC22Q9HCG8 908 aaKnown RBP16.6■□□□□ 0.25
SEC13-204ENST00000397099 NYAP2Q9P242 653 aa16.6■□□□□ 0.25
SEC13-204ENST00000397099 EEF2P13639 858 aaKnown RBP16.59■□□□□ 0.25
SEC13-204ENST00000397099 RASA1P20936 1047 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 SIAH1Q8IUQ4 282 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 PLEKHM2Q8IWE5 1019 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 SEC62Q99442 399 aaKnown RBP16.59■□□□□ 0.25
SEC13-204ENST00000397099 PAGR1Q9BTK6 254 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 TXNRD2Q9NNW7 524 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 ZMYM6O95789 1325 aa16.59■□□□□ 0.25
SEC13-204ENST00000397099 SPDYE16A6NNV3 312 aaPredicted RBP16.58■□□□□ 0.24
SEC13-204ENST00000397099 PEX10O60683 326 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 NT5C2P49902 561 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 PPARAQ07869 468 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 PLEKHH3Q7Z736 793 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 U2AF1L4Q8WU68 220 aaKnown RBP16.58■□□□□ 0.24
SEC13-204ENST00000397099 DPF3Q92784 378 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 RILPL2Q969X0 211 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 ANAPC4Q9UJX5 808 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 GJD2Q9UKL4 321 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 IVNS1ABPQ9Y6Y0 642 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 PLIN4Q96Q06 1357 aa16.58■□□□□ 0.24
SEC13-204ENST00000397099 MYH4Q9Y623 1939 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 STRNO43815 780 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 TFRCP02786 760 aaKnown RBP16.57■□□□□ 0.24
SEC13-204ENST00000397099 HMGCRP04035 888 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 TSPY3P0CV98 308 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 TSPY8P0CW00 308 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 RGS2P41220 211 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 ATP2B2Q01814 1243 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 GPR142Q7Z601 462 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 SHCBP1Q8NEM2 672 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 MKL1Q969V6 931 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 DEFB118Q96PH6 123 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 RLFQ13129 1914 aa16.57■□□□□ 0.24
SEC13-204ENST00000397099 A0A0G2JMZ2 1700 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 FLOT1O75955 427 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 FARP2O94887 1054 aaPredicted RBP16.56■□□□□ 0.24
SEC13-204ENST00000397099 SGPL1O95470 568 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 TTLL1O95922 423 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 PCP11498 1178 aaKnown RBP16.56■□□□□ 0.24
SEC13-204ENST00000397099 DSG3P32926 999 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 COPB2P35606 906 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 Q3C1V9 767 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 NEDD1Q8NHV4 660 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 PLXNB2O15031 1838 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 PARP14Q460N5 1801 aa16.56■□□□□ 0.24
SEC13-204ENST00000397099 CCDC171Q6TFL3 1326 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 IGKV6D-41A0A0C4DH26 115 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 SLC15A5A6NIM6 579 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 SDSP20132 328 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 HTATIP2Q9BUP3 242 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.55■□□□□ 0.24
SEC13-204ENST00000397099 MROH8Q9H579 483 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 DIAPH3Q9NSV4 1193 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 MTMR4Q9NYA4 1195 aa16.55■□□□□ 0.24
SEC13-204ENST00000397099 H0YGN5 161 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 SMIM22K7EJ46 135 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 CNMDO75829 334 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 SLC25A27O95847 323 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 CYP2B6P20813 491 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 MORN1Q5T089 497 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 SPICE1Q8N0Z3 855 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 GMCL1P1Q8NEA9 526 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 USP6NLQ92738 828 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 APBA2Q99767 749 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 SPATC1LQ9H0A9 340 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.54■□□□□ 0.24
SEC13-204ENST00000397099 PORCNQ9H237 461 aa16.54■□□□□ 0.24
SEC13-204ENST00000397099 SLC5A4Q9NY91 659 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms