RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LMBR1Q8WVP7 490 aa12.95□□□□□ -0.34
SYNE1-204ENST00000367248 C2orf69Q8N8R5 385 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 PSTPIP2Q9H939 334 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 CCPG1Q9ULG6 757 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 MRPL11Q9Y3B7 192 aaKnown RBP12.94□□□□□ -0.34
SYNE1-204ENST00000367248 ADD2P35612 726 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 NOC4LQ9BVI4 516 aaKnown RBP12.94□□□□□ -0.34
SYNE1-204ENST00000367248 KIAA0754O94854 1291 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 KIF4AO95239 1232 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 CNGA4Q8IV77 575 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 FMNL3Q8IVF7 1028 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 CSGALNACT2Q8N6G5 542 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 MSANTD4Q8NCY6 345 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 CEP83Q9Y592 693 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 CCDC66A2RUB6 948 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 DYNLL1P63167 89 aaKnown RBP12.94□□□□□ -0.34
SYNE1-204ENST00000367248 GNPTABQ3T906 1256 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 RDH13Q8NBN7 331 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 ZMYM6O95789 1325 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 ZNF202O95125 648 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 RASGRF1Q13972 1273 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 SEPT14Q6ZU15 432 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 MASTLQ96GX5 879 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 PPP1R16BQ96T49 567 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 SHROOM2Q13796 1616 aa12.94□□□□□ -0.34
SYNE1-204ENST00000367248 TUBB4AP04350 444 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 OSBPP22059 807 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 AOC3Q16853 763 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 RTEL1Q9NZ71 1219 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 ALKQ9UM73 1620 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 MED23Q9ULK4 1368 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 MTX1Q13505 466 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 FBXO11Q86XK2 927 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 FAM193BQ96PV7 902 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-204ENST00000367248 NT5C3AQ9H0P0 336 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 IQGAP3Q86VI3 1631 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CYP19A1P11511 503 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CKAP4Q07065 602 aaKnown RBP12.93□□□□□ -0.34
SYNE1-204ENST00000367248 TTC12Q9H892 705 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-204ENST00000367248 TULP4Q9NRJ4 1543 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 A0A0G2JLW4 131 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 OVOS2A0A0G2JMS6 1433 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 OVOS2A0A0J9YW53 1432 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CTAGE15A4D2H0 777 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CTAGE8P0CG41 777 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 DIXDC1Q155Q3 683 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 EPHA10Q5JZY3 1008 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 OVOS2Q6IE36 1432 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CTAGE6Q86UF2 777 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CTAGE4Q8IX94 777 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 ADCY9O60503 1353 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 GAS7O60861 476 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 PDIA3P30101 505 aaKnown RBP12.93□□□□□ -0.34
SYNE1-204ENST00000367248 WDR44Q5JSH3 913 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 MYCT1Q8N699 235 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 SERPINB13Q9UIV8 391 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 CTNND2Q9UQB3 1225 aa12.93□□□□□ -0.34
SYNE1-204ENST00000367248 GCOM1H8Y6P7 765 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 POLR2MP0CAP2 368 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 CHRNA5P30532 468 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 SIRT2Q8IXJ6 389 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 LCORLQ8N3X6 602 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 ZBTB9Q96C00 473 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 SWAP70Q9UH65 585 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 ATXN8OSP0DMR3 200 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 OSBP2Q969R2 916 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PAXBP1Q9Y5B6 917 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 RNF17Q9BXT8 1623 aaKnown RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PRKAB2O43741 272 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 SLC8A3P57103 927 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PRR16Q569H4 304 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 GPATCH4Q5T3I0 446 aaKnown RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 GALNT17Q6IS24 598 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 ZNF589Q86UQ0 364 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 RTKN2Q8IZC4 609 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 COA1Q9GZY4 146 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 ADGRB3O60242 1522 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 GOLGA6L7A0A1B0GV03 622 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 IREB2P48200 963 aaKnown RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 NOLC1Q14978 699 aaKnown RBP eCLIP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 NKX1-1Q15270 411 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 INF2Q27J81 1249 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 KCTD1Q719H9 257 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PLCD4Q9BRC7 762 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PCDHA1Q9Y5I3 950 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 BTBD18B2RXH4 712 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 PAK1Q13153 545 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 ADCK5Q3MIX3 580 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 FAM102BQ5T8I3 360 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 APOA5Q6Q788 366 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 GSTA5Q7RTV2 222 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 KANSL2Q9H9L4 492 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 MIER3Q7Z3K6 550 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 GPKOWQ92917 476 aaPredicted RBP eCLIP12.92□□□□□ -0.34
SYNE1-204ENST00000367248 UBN2Q6ZU65 1347 aa12.92□□□□□ -0.34
SYNE1-204ENST00000367248 LMTK2Q8IWU2 1503 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 COL15A1P39059 1388 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 USP28Q96RU2 1077 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 DHX36Q9H2U1 1008 aaKnown RBP12.91□□□□□ -0.34
SYNE1-204ENST00000367248 ZKSCAN5Q9Y2L8 839 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms