RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DUX4L3P0CJ86 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4L4P0CJ87 422 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4L5P0CJ88 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4L6P0CJ89 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4L7P0CJ90 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 ZFXP17010 805 aaPredicted RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 CDKL2Q92772 493 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DUX4Q9UBX2 424 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 DAPK3O43293 454 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 MAGEA9P43362 315 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 STX17P56962 302 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 SRRM1Q8IYB3 904 aaKnown RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 ARHGAP18Q8N392 663 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 RASGRF2O14827 1237 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 OSCARQ8IYS5 282 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 KPNA2P52292 529 aaKnown RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 NOP14P78316 857 aaKnown RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 PDXDC1Q6P996 788 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 VPS37BQ9H9H4 285 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 MIS18AQ9NYP9 233 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 MAGEB6P1A0A0J9YX57 407 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 CHMLP26374 656 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 MCF2L2Q86YR7 1114 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 PEG3Q9GZU2 1588 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 MX2P20592 715 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 STRN3Q13033 797 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 CUL1Q13616 776 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 RETREG2Q8NC44 543 aa15.68■□□□□ 0.1
COL7A1-201ENST00000328333 PACSIN2Q9UNF0 486 aaPredicted RBP15.68■□□□□ 0.1
COL7A1-201ENST00000328333 KIF24Q5T7B8 1368 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 ABCA10Q8WWZ4 1543 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 SLC9C2Q5TAH2 1124 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 MCTP2Q6DN12 878 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 PLEKHM2Q8IWE5 1019 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 CALR3Q96L12 384 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 ARHGEF11O15085 1522 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 ARHGEF9O43307 516 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 MMEL1Q495T6 779 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 SH3GL3Q99963 347 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 TRIM6Q9C030 488 aaPredicted RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 SCYL3Q8IZE3 742 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 AFG3L2Q9Y4W6 797 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 ABCA5Q8WWZ7 1642 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 NUMA1Q14980 2115 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 H0YCG3 227 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 NONOQ15233 471 aaKnown RBP eCLIP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 MAST1Q9Y2H9 1570 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 TMEM232C9JQI7 657 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 JADE1Q6IE81 842 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 SEPT8Q92599 483 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 CSRNP1Q96S65 589 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 MRPL40Q9NQ50 206 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 DAAM1Q9Y4D1 1078 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 HSPA6P17066 643 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 GARSP41250 739 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 RBM6P78332 1123 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 PPWD1Q96BP3 646 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 PDE11AQ9HCR9 933 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 NOP53Q9NZM5 478 aaKnown RBP15.67■□□□□ 0.1
COL7A1-201ENST00000328333 TOPBP1Q92547 1522 aa15.67■□□□□ 0.1
COL7A1-201ENST00000328333 RSBN1LQ6PCB5 846 aaPredicted RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 IQSEC3Q9UPP2 1182 aaPredicted RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 TNNI2P48788 182 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 LRRC8AQ8IWT6 810 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 FAM81BQ96LP2 452 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 ICE2Q659A1 982 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 PALM2Q8IXS6 379 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 TRIM11Q96F44 468 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 SCHIP1Q9P0W5 487 aaPredicted RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 DCTN3O75935 186 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 PDE4DQ08499 809 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 C6orf118Q5T5N4 469 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 NELFBQ8WX92 580 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 MRPL46Q9H2W6 279 aaKnown RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 EEF1DP29692 281 aaKnown RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 MAGEA1P43355 309 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 NR1H3Q13133 447 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 LARP6Q9BRS8 491 aaKnown RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 RRAGDQ9NQL2 400 aaPredicted RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 DIXDC1Q155Q3 683 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 CYP7A1P22680 504 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 THUMPD2Q9BTF0 503 aaKnown RBP15.66■□□□□ 0.1
COL7A1-201ENST00000328333 CARD10Q9BWT7 1032 aa15.66■□□□□ 0.1
COL7A1-201ENST00000328333 CCNT1O60563 726 aaKnown RBP15.65■□□□□ 0.1
COL7A1-201ENST00000328333 STAT1P42224 750 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 RAP1GDS1P52306 607 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TMED1Q13445 227 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TRIM60Q495X7 471 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 C2CD5Q86YS7 1000 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 IFT88Q13099 833 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TMCO5AQ8N6Q1 288 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 RUBCNQ92622 972 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 JPH2Q9BR39 696 aaPredicted RBP15.65■□□□□ 0.1
COL7A1-201ENST00000328333 CCDC184Q52MB2 194 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 KSR2Q6VAB6 950 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 SAAL1Q96ER3 474 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TRIM31Q9BZY9 425 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 SERPINB10P48595 397 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 TAF12Q16514 161 aa15.65■□□□□ 0.1
COL7A1-201ENST00000328333 GRAMD4Q6IC98 578 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms