RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 FTOQ9C0B1 505 aaKnown RBP eCLIP17.96■□□□□ 0.47
LSM6-201ENST00000296581 TMOD2Q9NZR1 351 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 MMP14P50281 582 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 TNIP1Q15025 636 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 SAFBQ15424 915 aaKnown RBP eCLIP17.96■□□□□ 0.47
LSM6-201ENST00000296581 SPDYE2Q495Y8 402 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 STAG2Q8N3U4 1231 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 SHISA4Q96DD7 197 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 ZBED3Q96IU2 234 aaPredicted RBP17.96■□□□□ 0.47
LSM6-201ENST00000296581 POLR3EQ9NVU0 708 aa17.96■□□□□ 0.47
LSM6-201ENST00000296581 ZNF70Q9UC06 446 aaPredicted RBP17.96■□□□□ 0.47
LSM6-201ENST00000296581 XBP1P17861 261 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 TATDN1Q6P1N9 297 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 ZSCAN29Q8IWY8 852 aaPredicted RBP17.95■□□□□ 0.46
LSM6-201ENST00000296581 LZTS2Q9BRK4 669 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 FOXP1Q9H334 677 aaPredicted RBP17.95■□□□□ 0.46
LSM6-201ENST00000296581 KCNJ14Q9UNX9 436 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 NASPP49321 788 aaPredicted RBP17.95■□□□□ 0.46
LSM6-201ENST00000296581 CEBPZQ03701 1054 aaKnown RBP17.95■□□□□ 0.46
LSM6-201ENST00000296581 FKBP1CQ5VVH2 108 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 DIS3L2Q8IYB7 885 aaKnown RBP17.95■□□□□ 0.46
LSM6-201ENST00000296581 PHF20Q9BVI0 1012 aa17.95■□□□□ 0.46
LSM6-201ENST00000296581 BAZ2BQ9UIF8 2168 aaKnown RBP17.94■□□□□ 0.46
LSM6-201ENST00000296581 hCG_1642624A0A1W2PR95 340 aa17.94■□□□□ 0.46
LSM6-201ENST00000296581 YEATS4O95619 227 aa17.94■□□□□ 0.46
LSM6-201ENST00000296581 GNL2Q13823 731 aaKnown RBP17.94■□□□□ 0.46
LSM6-201ENST00000296581 PFKFB3Q16875 520 aaPredicted RBP17.94■□□□□ 0.46
LSM6-201ENST00000296581 PPP4R3BQ5MIZ7 849 aa17.94■□□□□ 0.46
LSM6-201ENST00000296581 SPON1Q9HCB6 807 aa17.94■□□□□ 0.46
LSM6-201ENST00000296581 GOLGA6L3A6NEY3 463 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 BTBD18B2RXH4 712 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 TTLL1O95922 423 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 SLURP2P0DP57 97 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 SCG2P13521 617 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 RASSF7Q02833 373 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 SLC35G1Q2M3R5 365 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 NOSTRINQ8IVI9 506 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 LINC00301Q8NCQ3 95 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 FAM151AQ8WW52 585 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 VPS54Q9P1Q0 977 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 MYH4Q9Y623 1939 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 GOLGA6L4A6NEF3 574 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 RPS12P25398 132 aaKnown RBP17.93■□□□□ 0.46
LSM6-201ENST00000296581 SMARCA1P28370 1054 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 PRELPP51888 382 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 CCDC183Q5T5S1 534 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 GAS2L3Q86XJ1 694 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 CLIC4Q9Y696 253 aa17.93■□□□□ 0.46
LSM6-201ENST00000296581 CNTNAP1P78357 1384 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 PARP1P09874 1014 aaKnown RBP17.92■□□□□ 0.46
LSM6-201ENST00000296581 ANO1Q5XXA6 986 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 SPZ1Q9BXG8 430 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 TRIM34Q9BYJ4 488 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 PANK2Q9BZ23 570 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 CLRN2A0PK11 232 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 FZD9O00144 591 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 SNHG28P0DPA3 235 aa17.92■□□□□ 0.46
LSM6-201ENST00000296581 ZNF280AP59817 542 aaPredicted RBP17.92■□□□□ 0.46
LSM6-201ENST00000296581 CERKLQ49MI3 558 aaPredicted RBP17.92■□□□□ 0.46
LSM6-201ENST00000296581 FAM196BA6NMK8 535 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 TCP10L2B9ZVM9 353 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 KLRF2D3W0D1 207 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 CYTH3O43739 400 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 TPRNQ4KMQ1 711 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 KCNG4Q8TDN1 519 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 CLIP2Q9UDT6 1046 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 GOLGB1Q14789 3259 aaKnown RBP17.91■□□□□ 0.46
LSM6-201ENST00000296581 PDHBP11177 359 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 LIG1P18858 919 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 NPY5RQ15761 445 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 RASGRP2Q7LDG7 609 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 CLEC10AQ8IUN9 316 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 CSRNP1Q96S65 589 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 MYOZ2Q9NPC6 264 aa17.91■□□□□ 0.46
LSM6-201ENST00000296581 HERC5Q9UII4 1024 aaKnown RBP17.91■□□□□ 0.46
LSM6-201ENST00000296581 SYCE3A1L190 88 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 USP17L5A8MUK1 530 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 MPHOSPH10O00566 681 aaKnown RBP17.9■□□□□ 0.46
LSM6-201ENST00000296581 GOLGA8HP0CJ92 632 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 STK38Q15208 465 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 USP17L2Q6R6M4 530 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 FAM83AQ86UY5 434 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 LRRC47Q8N1G4 583 aaKnown RBP17.9■□□□□ 0.46
LSM6-201ENST00000296581 OXER1Q8TDS5 423 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 SH3GLB2Q9NR46 395 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 MTMR7Q9Y216 660 aa17.9■□□□□ 0.46
LSM6-201ENST00000296581 WNT10BO00744 389 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 KRT2P35908 639 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 NR5A1Q13285 461 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 SLC39A14Q15043 492 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 ASPRV1Q53RT3 343 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 LRSAM1Q6UWE0 723 aa17.89■□□□□ 0.46
LSM6-201ENST00000296581 SPTLC2O15270 562 aa17.89■□□□□ 0.45
LSM6-201ENST00000296581 MYO1BO43795 1136 aa17.89■□□□□ 0.45
LSM6-201ENST00000296581 LETM1O95202 739 aaPredicted RBP17.89■□□□□ 0.45
LSM6-201ENST00000296581 VEGFAP15692 232 aaPredicted RBP17.89■□□□□ 0.45
LSM6-201ENST00000296581 EIF6P56537 245 aaKnown RBP17.89■□□□□ 0.45
LSM6-201ENST00000296581 PTPAQ15257 358 aa17.89■□□□□ 0.45
LSM6-201ENST00000296581 TMEM179Q6ZVK1 233 aa17.89■□□□□ 0.45
LSM6-201ENST00000296581 FAM177A1Q8N128 213 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms