RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 MYH2Q9UKX2 1941 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 CNTNAP5Q8WYK1 1306 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 ARAP2Q8WZ64 1704 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 GPR75-ASB3A0A0A6YYF3 556 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 PDE6BP35913 854 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 PPP2R5BQ15173 497 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 CEP95Q96GE4 821 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 KCNF1Q9H3M0 494 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 KLRF2D3W0D1 207 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 ALDH1B1P30837 517 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 PPP4CP60510 307 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 PTGDRQ13258 359 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 CREBRFQ8IUR6 639 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 SLF2Q8IX21 1173 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 RASSF8Q8NHQ8 419 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 TBC1D22AQ8WUA7 517 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 FBXO2Q9UK22 296 aaPredicted RBP13.14□□□□□ -0.31
CUX1-202ENST00000292538 CEP131Q9UPN4 1083 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 PRR29P0C7W0 189 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 RHBDL3P58872 404 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 EZH2Q15910 746 aaKnown RBP13.14□□□□□ -0.31
CUX1-202ENST00000292538 TTC38Q5R3I4 469 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 KRBA2Q6ZNG9 492 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 METTL16Q86W50 562 aaKnown RBP13.14□□□□□ -0.31
CUX1-202ENST00000292538 FOXP4Q8IVH2 680 aaPredicted RBP13.14□□□□□ -0.31
CUX1-202ENST00000292538 PLIN2Q99541 437 aa13.14□□□□□ -0.31
CUX1-202ENST00000292538 PDGFDQ9GZP0 370 aaPredicted RBP13.14□□□□□ -0.31
CUX1-202ENST00000292538 NOLC1Q14978 699 aaKnown RBP eCLIP13.13□□□□□ -0.313e-6■■□□□ 12.3
CUX1-202ENST00000292538 CCDC144BQ3MJ40 725 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 KLHL10Q6JEL2 608 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 COA1Q9GZY4 146 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 ZNF287Q9HBT7 754 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 DDX4Q9NQI0 724 aaKnown RBP13.13□□□□□ -0.31
CUX1-202ENST00000292538 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.13□□□□□ -0.31
CUX1-202ENST00000292538 H0YIN7 160 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 COBLO75128 1261 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 PLCG2P16885 1265 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 PTPREP23469 700 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 DGKHQ86XP1 1220 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 AKT1S1Q96B36 256 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 MASTLQ96GX5 879 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 GPCPD1Q9NPB8 672 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 IFNKQ9P0W0 207 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 MAD2L2Q9UI95 211 aa13.13□□□□□ -0.31
CUX1-202ENST00000292538 ATP1A3P13637 1013 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 RCAN1P53805 252 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 NLRP12P59046 1061 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 NFIAQ12857 509 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 PFKFB3Q16875 520 aaPredicted RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 TYW1BQ6NUM6 668 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 SYMPKQ92797 1274 aaKnown RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 C4AP0C0L4 1744 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 LAMB2P55268 1798 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 DOCK2Q92608 1830 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 CYTH3O43739 400 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 ZNF500O60304 480 aaPredicted RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 TRMT44Q8IYL2 757 aaKnown RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 UIMC1Q96RL1 719 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 HPSEQ9Y251 543 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 CCDC194A0A1B0GVG4 234 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 USP17L5A8MUK1 530 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 PLA2G4DQ86XP0 818 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 ZFPM1Q8IX07 1006 aa13.12□□□□□ -0.31
CUX1-202ENST00000292538 SRPRBQ9Y5M8 271 aaKnown RBP13.12□□□□□ -0.31
CUX1-202ENST00000292538 PLSCR1O15162 318 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 OFD1O75665 1012 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 CAVIN2O95810 425 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 SERPINC1P01008 464 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 PARP1P09874 1014 aaKnown RBP13.11□□□□□ -0.31
CUX1-202ENST00000292538 AKR1B1P15121 316 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 NAPAP54920 295 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 POSTNQ15063 836 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 AOC3Q16853 763 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 INF2Q27J81 1249 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 TPM4P67936 248 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 WWC2Q6AWC2 1192 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 C15orf52Q6ZUT6 534 aaKnown RBP13.11□□□□□ -0.31
CUX1-202ENST00000292538 BLIDQ8IZY5 108 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 PPP1R1BQ9UD71 204 aaPredicted RBP13.11□□□□□ -0.31
CUX1-202ENST00000292538 DUOX1Q9NRD9 1551 aa13.11□□□□□ -0.31
CUX1-202ENST00000292538 FAM205AQ6ZU69 1335 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 A0A087X0B3 334 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 NPY5RQ15761 445 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 SLC35G1Q2M3R5 365 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 C16orf86Q6ZW13 317 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 SMYD4Q8IYR2 804 aaPredicted RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 SMARCE1Q969G3 411 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 XPO4Q9C0E2 1151 aaKnown RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 BLZF1Q9H2G9 400 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 HOOK1Q9UJC3 728 aaKnown RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 C21orf2O43822 256 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 CDK11BP21127 795 aaKnown RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 SLC16A2P36021 539 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 STX17P56962 302 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 SHROOM1Q2M3G4 852 aaPredicted RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 TMC6Q7Z403 805 aa13.1□□□□□ -0.31
CUX1-202ENST00000292538 CACTINQ8WUQ7 758 aaKnown RBP13.1□□□□□ -0.31
CUX1-202ENST00000292538 TEKT1Q969V4 418 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms