RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 OXER1Q8TDS5 423 aa18.43■□□□□ 0.54
CTCF-201ENST00000264010 RRP36Q96EU6 259 aaKnown RBP18.43■□□□□ 0.54
CTCF-201ENST00000264010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.43■□□□□ 0.54
CTCF-201ENST00000264010 PARP1P09874 1014 aaKnown RBP18.43■□□□□ 0.54
CTCF-201ENST00000264010 FAM217BQ9NTX9 383 aaPredicted RBP18.43■□□□□ 0.54
CTCF-201ENST00000264010 GOLGA6L9A6NEM1 432 aa18.43■□□□□ 0.54
CTCF-201ENST00000264010 TRAPPC10P48553 1259 aa18.43■□□□□ 0.54
CTCF-201ENST00000264010 PTPAQ15257 358 aa18.43■□□□□ 0.54
CTCF-201ENST00000264010 BLIDQ8IZY5 108 aa18.43■□□□□ 0.54
CTCF-201ENST00000264010 MPHOSPH10O00566 681 aaKnown RBP18.42■□□□□ 0.54
CTCF-201ENST00000264010 SPAG1Q07617 926 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 F8W031 263 aaPredicted RBP18.42■□□□□ 0.54
CTCF-201ENST00000264010 GNA11P29992 359 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 RBM5P52756 815 aaKnown RBP eCLIP18.42■□□□□ 0.54
CTCF-201ENST00000264010 PTGDRQ13258 359 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 ADGRA1Q86SQ6 560 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 PICALMQ13492 652 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 MFSD14BQ5SR56 506 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 CPLX3Q8WVH0 158 aa18.42■□□□□ 0.54
CTCF-201ENST00000264010 MROH7-TTC4A0A0A0MT08 1334 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 RIMBP2O15034 1052 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 DGKHQ86XP1 1220 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 CCDC102AQ96A19 550 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 MAN1B1Q9UKM7 699 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 BTDP43251 543 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 ZNF827Q17R98 1081 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 SYMPKQ92797 1274 aaKnown RBP18.41■□□□□ 0.54
CTCF-201ENST00000264010 SERPINB2P05120 415 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 HLA-DOAP06340 250 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 DIXDC1Q155Q3 683 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 ZSCAN29Q8IWY8 852 aaPredicted RBP18.41■□□□□ 0.54
CTCF-201ENST00000264010 TRMT44Q8IYL2 757 aaKnown RBP18.41■□□□□ 0.54
CTCF-201ENST00000264010 EYA3Q99504 573 aa18.41■□□□□ 0.54
CTCF-201ENST00000264010 N4BP3O15049 544 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 LRP6O75581 1613 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 UBE2Q2LH0YL09 131 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 ADRA2BP18089 450 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 IKQ13123 557 aaPredicted RBP18.4■□□□□ 0.54
CTCF-201ENST00000264010 NFIXQ14938 502 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 CCDC96Q2M329 555 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 SBK1Q52WX2 424 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 RAB34Q9BZG1 259 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 RASSF4Q9H2L5 321 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 TUBE1Q9UJT0 475 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 FBXO2Q9UK22 296 aaPredicted RBP18.4■□□□□ 0.54
CTCF-201ENST00000264010 BBOX1O75936 387 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 URI1O94763 535 aaPredicted RBP18.4■□□□□ 0.54
CTCF-201ENST00000264010 SLFN14P0C7P3 912 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 ARID5BQ14865 1188 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 TMEM266Q2M3C6 531 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 MAP3K14Q99558 947 aa18.4■□□□□ 0.54
CTCF-201ENST00000264010 TRPC5Q9UL62 973 aaPredicted RBP18.4■□□□□ 0.54
CTCF-201ENST00000264010 KLRK1P26718 216 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 SEC23AQ15436 765 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 DYNLL2Q96FJ2 89 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 OGFRQ9NZT2 677 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 NMT2O60551 498 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 PLCD1P51178 756 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 GIMAP7Q8NHV1 300 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 CALML4Q96GE6 196 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 SYNRGQ9UMZ2 1314 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 FAM193AP78312 1265 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 AMPD3Q01432 767 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 SH3RF3Q8TEJ3 882 aaPredicted RBP18.39■□□□□ 0.53
CTCF-201ENST00000264010 HPSEQ9Y251 543 aa18.39■□□□□ 0.53
CTCF-201ENST00000264010 ATP1A3P13637 1013 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 GALNT17Q6IS24 598 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 GRAMD1CQ8IYS0 662 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 GPKOWQ92917 476 aaPredicted RBP eCLIP18.38■□□□□ 0.53
CTCF-201ENST00000264010 OSBPL5Q9H0X9 879 aaPredicted RBP18.38■□□□□ 0.53
CTCF-201ENST00000264010 METTL16Q86W50 562 aaKnown RBP18.38■□□□□ 0.53
CTCF-201ENST00000264010 BAG1Q99933 345 aaPredicted RBP18.38■□□□□ 0.53
CTCF-201ENST00000264010 ZSWIM4Q9H7M6 989 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 DNAI1Q9UI46 699 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 UBR2Q8IWV8 1755 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 NUP188Q5SRE5 1749 aa18.38■□□□□ 0.53
CTCF-201ENST00000264010 ERCC5P28715 1186 aaPredicted RBP18.38■□□□□ 0.53
CTCF-201ENST00000264010 SLU7O95391 586 aaKnown RBP18.37■□□□□ 0.53
CTCF-201ENST00000264010 SEPT12Q8IYM1 358 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 BANK1Q8NDB2 785 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 ENOX1Q8TC92 643 aaKnown RBP18.37■□□□□ 0.53
CTCF-201ENST00000264010 STAMQ92783 540 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 ZNHIT6Q9NWK9 470 aaKnown RBP18.37■□□□□ 0.53
CTCF-201ENST00000264010 SYT10Q6XYQ8 523 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 EPSTI1Q96J88 318 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 GSDMAQ96QA5 445 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 PHF20Q9BVI0 1012 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 PDS5AQ29RF7 1337 aaKnown RBP18.37■□□□□ 0.53
CTCF-201ENST00000264010 CASQ1P31415 396 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 PFKFB3Q16875 520 aaPredicted RBP18.37■□□□□ 0.53
CTCF-201ENST00000264010 SPECC1LQ69YQ0 1117 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 KRT25Q7Z3Z0 450 aa18.37■□□□□ 0.53
CTCF-201ENST00000264010 KLRF2D3W0D1 207 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 GTF2IP78347 998 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 WWC2Q6AWC2 1192 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 GPR101Q96P66 508 aaPredicted RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 PCDHA4Q9UN74 947 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.36■□□□□ 0.535e-7■■■□□ 17.6
CTCF-201ENST00000264010 ARHGAP6O43182 974 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 TROAPQ12815 778 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms