RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NPL4	YBR170C	YSH1	Q06224	779 aa	Predicted RBP	4.64	□□□□□ -1.67
NPL4	YBR170C	YDL086W	Q07505	273 aa		4.64	□□□□□ -1.67
NPL4	YBR170C	LYS21	Q12122	440 aa	Known RBP	4.64	□□□□□ -1.67
NPL4	YBR170C	PDE1	P22434	369 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	PMI40	P29952	429 aa	Known RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	CDC5	P32562	705 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	SRB5	P32585	307 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	AUR1	P36107	401 aa	Predicted RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	LTP1	P40347	161 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	YJL068C	P40363	299 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	IME4	P41833	600 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	SNF12	P53628	566 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	DAK1	P54838	584 aa	Known RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	CTF4	Q01454	927 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	RPS15	Q01855	142 aa	Known RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	YLR345W	Q06137	509 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	SPE4	Q12455	300 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	YER175W-A	Q8TGU4	54 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	NAT1	P12945	854 aa	Known RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	RPS0A	P32905	252 aa	Known RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	MAL33	P38157	468 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	MUM2	P38236	366 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	DJP1	P40564	432 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	LYS4	P49367	693 aa	Predicted RBP	4.63	□□□□□ -1.67
NPL4	YBR170C	DIP5	P53388	608 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	SPC98	P53540	846 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	MFM1	Q02783	413 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	USV1	Q12132	391 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	YOL159C-A	Q3E769	90 aa		4.63	□□□□□ -1.67
NPL4	YBR170C	PWP1	P21304	576 aa	Known RBP	4.62	□□□□□ -1.67
NPL4	YBR170C	ORC2	P32833	620 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	CCL1	P37366	393 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	MET18	P40469	1032 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	MET28	P40573	187 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	MCM6	P53091	1017 aa	Known RBP	4.62	□□□□□ -1.67
NPL4	YBR170C	LCL3	P53153	274 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	YGL036W	P53185	909 aa	Predicted RBP	4.62	□□□□□ -1.67
NPL4	YBR170C	YGR079W	P53249	370 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	YGR151C	P53287	111 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	JJJ1	P53863	590 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	RMT2	Q03305	412 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	SKG3	Q06315	1026 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	PSR1	Q07800	427 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	TCO89	Q08921	799 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	NTO1	Q12311	748 aa		4.62	□□□□□ -1.67
NPL4	YBR170C	ABF1	P14164	731 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	PMS1	P14242	873 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	RFA2	P26754	273 aa	Known RBP	4.61	□□□□□ -1.67
NPL4	YBR170C	REG2	P38232	338 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	LNP1	P38878	278 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	SMF1	P38925	575 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	JEM1	P40358	645 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	SEC24	P40482	926 aa	Known RBP	4.61	□□□□□ -1.67
NPL4	YBR170C	ROK1	P45818	564 aa	Predicted RBP	4.61	□□□□□ -1.67
NPL4	YBR170C	YGR016W	P53209	190 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	BUD17	P53727	317 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	MEH1	Q02205	184 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	IRC3	Q06683	689 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	YEH1	Q07804	573 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	ISA2	Q12425	185 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	YJR112W-A	Q3E743	109 aa		4.61	□□□□□ -1.67
NPL4	YBR170C	YBR085C-A	O43137	85 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	CPA2	P03965	1118 aa	Known RBP	4.6	□□□□□ -1.67
NPL4	YBR170C	ERG4	P25340	473 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	ADK2	P26364	225 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	CNE1	P27825	502 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	YIP4	P53093	235 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	UFO1	Q04511	668 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	ECM22	Q05958	814 aa	Predicted RBP	4.6	□□□□□ -1.67
NPL4	YBR170C	MRI1	Q06489	411 aa	Known RBP	4.6	□□□□□ -1.67
NPL4	YBR170C	GPN2	Q08726	347 aa	Predicted RBP	4.6	□□□□□ -1.67
NPL4	YBR170C	YPL272C	Q08984	517 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	RKI1	Q12189	258 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	YPT6	Q99260	215 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	KGD2	P19262	463 aa	Predicted RBP	4.6	□□□□□ -1.67
NPL4	YBR170C	YPT10	P38146	199 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	CCT6	P39079	546 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	CAJ1	P39101	391 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	SGF73	P53165	657 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	NMA2	P53204	395 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	INA17	Q02888	182 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	YML119W	Q03208	357 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	YML037C	Q03703	340 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	YPL216W	Q08964	1102 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	HIF1	Q12373	385 aa		4.6	□□□□□ -1.67
NPL4	YBR170C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
NPL4	YBR170C	YPK1	P12688	680 aa	Known RBP	4.59	□□□□□ -1.67
NPL4	YBR170C	AMD2	P22580	549 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	YSP3	P25036	478 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	GPI10	P30777	616 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	KES1	P35844	434 aa	Known RBP	4.59	□□□□□ -1.67
NPL4	YBR170C	UBP11	P36026	717 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	APL3	P38065	1025 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	KSP1	P38691	1029 aa	Known RBP	4.59	□□□□□ -1.67
NPL4	YBR170C	THI6	P41835	540 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	YGR066C	P53242	292 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	NNF2	P53253	936 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	YNL092W	P53934	400 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	BUD7	Q08754	746 aa		4.59	□□□□□ -1.67
NPL4	YBR170C	RIM20	Q12033	661 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms