RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 VPS54Q9P1Q0 977 aa14.87□□□□□ -0.03
MSH6-214ENST00000616033 FOXO4P98177 505 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 SLC7A5Q01650 507 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 ARHGEF25Q86VW2 580 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 TRIM22Q8IYM9 498 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 AIDAQ96BJ3 306 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 IQSEC3Q9UPP2 1182 aaPredicted RBP14.86□□□□□ -0.03
MSH6-214ENST00000616033 KAT6BQ8WYB5 2073 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 CHD2O14647 1828 aaKnown RBP14.86□□□□□ -0.03
MSH6-214ENST00000616033 ZNF18P17022 549 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 MAP2K2P36507 400 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 PIP4K2BP78356 416 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 C2orf54Q08AI8 447 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 BCAS4Q8TDM0 211 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 APPBP2Q92624 585 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 SMARCAL1Q9NZC9 954 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 MINDY4BA8MYZ0 360 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 POTEB2H3BUK9 544 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 ATP1A1P05023 1023 aaKnown RBP14.86□□□□□ -0.03
MSH6-214ENST00000616033 PLCD1P51178 756 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 SLC4A8Q2Y0W8 1093 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.86□□□□□ -0.032e-7■■■■□ 25.1
MSH6-214ENST00000616033 ANKRD20A12PQ8NF67 263 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 NCAPD2Q15021 1401 aa14.86□□□□□ -0.03
MSH6-214ENST00000616033 MYBL2P10244 700 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 CXCR5P32302 372 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 CYP27A1Q02318 531 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 TSR1Q2NL82 804 aaKnown RBP14.85□□□□□ -0.03
MSH6-214ENST00000616033 CNNM1Q9NRU3 951 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 PSD3Q9NYI0 1048 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 WWC3Q9ULE0 1092 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 FMN2Q9NZ56 1722 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 A0A087X0B3 334 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 MORC3Q14149 939 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 NAPBQ9H115 298 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 GOLGA6CA6NDK9 693 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 ERLIN2O94905 339 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 GOLGA6DP0CG33 693 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 SND1Q7KZF4 910 aaKnown RBP eCLIP14.85□□□□□ -0.036e-6■□□□□ 9.2
MSH6-214ENST00000616033 KAT14Q9H8E8 782 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 GOLGA6AQ9NYA3 693 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 ZSWIM5Q9P217 1185 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 DUSP10Q9Y6W6 482 aa14.85□□□□□ -0.03
MSH6-214ENST00000616033 A0A1B0GTH6 734 aa14.84□□□□□ -0.03
MSH6-214ENST00000616033 MDM2Q00987 491 aaPredicted RBP14.84□□□□□ -0.03
MSH6-214ENST00000616033 MIGA1Q8NAN2 632 aa14.84□□□□□ -0.03
MSH6-214ENST00000616033 SH2B2O14492 632 aaPredicted RBP14.84□□□□□ -0.03
MSH6-214ENST00000616033 CNGA4Q8IV77 575 aa14.84□□□□□ -0.03
MSH6-214ENST00000616033 SMCR8Q8TEV9 937 aaPredicted RBP14.84□□□□□ -0.03
MSH6-214ENST00000616033 SYMPKQ92797 1274 aaKnown RBP14.84□□□□□ -0.03
MSH6-214ENST00000616033 FBXO2Q9UK22 296 aaPredicted RBP14.84□□□□□ -0.03
MSH6-214ENST00000616033 ZNF532Q9HCE3 1301 aa14.84□□□□□ -0.03
MSH6-214ENST00000616033 ANKARQ7Z5J8 1434 aa14.84□□□□□ -0.03
MSH6-214ENST00000616033 TRIM49BA6NDI0 452 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 EBAG9O00559 213 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 PRKAB2O43741 272 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 TATP17735 454 aaPredicted RBP14.83□□□□□ -0.03
MSH6-214ENST00000616033 CORO7P57737 925 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 RNASE9P60153 205 aaKnown RBP14.83□□□□□ -0.03
MSH6-214ENST00000616033 DPYDQ12882 1025 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 KRT31Q15323 416 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 EZH2Q15910 746 aaKnown RBP14.83□□□□□ -0.03
MSH6-214ENST00000616033 RABL6Q3YEC7 729 aaPredicted RBP14.83□□□□□ -0.03
MSH6-214ENST00000616033 SPATA1Q5VX52 437 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 FAM76AQ8TAV0 307 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 PANX2Q96RD6 677 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 NBPF3Q9H094 633 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 ARMT1Q9H993 441 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 MKRN1Q9UHC7 482 aaKnown RBP14.83□□□□□ -0.03
MSH6-214ENST00000616033 CRYBG1Q9Y4K1 1723 aa14.83□□□□□ -0.03
MSH6-214ENST00000616033 PPFIA4O75335 1185 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 SYF2O95926 243 aaKnown RBP14.83□□□□□ -0.04
MSH6-214ENST00000616033 SCP2P22307 547 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 NAP1L1P55209 391 aaKnown RBP14.83□□□□□ -0.04
MSH6-214ENST00000616033 GNGT1P63211 74 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 LDHAL6AQ6ZMR3 332 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 TADA2BQ86TJ2 420 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 KIRREL3Q8IZU9 778 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 ADD3Q9UEY8 706 aaKnown RBP14.83□□□□□ -0.04
MSH6-214ENST00000616033 RTN1Q16799 776 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 MSANTD4Q8NCY6 345 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 EHD2Q9NZN4 543 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 TTF2Q9UNY4 1162 aaKnown RBP14.83□□□□□ -0.04
MSH6-214ENST00000616033 NWD1Q149M9 1564 aa14.83□□□□□ -0.04
MSH6-214ENST00000616033 FAM170AA1A519 330 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 ATP2C2O75185 946 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 EIF5P55010 431 aaKnown RBP14.82□□□□□ -0.04
MSH6-214ENST00000616033 MAP9Q49MG5 647 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 RNF187Q5TA31 235 aaPredicted RBP14.82□□□□□ -0.04
MSH6-214ENST00000616033 ANKRD13CQ8N6S4 541 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 RRP36Q96EU6 259 aaKnown RBP14.82□□□□□ -0.04
MSH6-214ENST00000616033 RUFY1Q96T51 708 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.82□□□□□ -0.04
MSH6-214ENST00000616033 YY1AP1Q9H869 796 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 ABHD10Q9NUJ1 306 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 RAB21Q9UL25 225 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 EPN1Q9Y6I3 576 aaPredicted RBP14.82□□□□□ -0.04
MSH6-214ENST00000616033 LAMA4Q16363 1823 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 SMIM22K7EJ46 135 aa14.82□□□□□ -0.04
MSH6-214ENST00000616033 SSBP05455 408 aaKnown RBP eCLIP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms