RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 WASF1Q92558 559 aa20.54■□□□□ 0.88
SHKBP1-224ENST00000600718 PHKBQ93100 1093 aa20.54■□□□□ 0.88
SHKBP1-224ENST00000600718 MYOZ2Q9NPC6 264 aa20.54■□□□□ 0.88
SHKBP1-224ENST00000600718 CLRN2A0PK11 232 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 PNMA1Q8ND90 353 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 FAM151AQ8WW52 585 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 TMEM47Q9BQJ4 181 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 SLC26A6Q9BXS9 759 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 TRIM34Q9BYJ4 488 aa20.53■□□□□ 0.88
SHKBP1-224ENST00000600718 TCP10L2B9ZVM9 353 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 KIF5BP33176 963 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 GSE1Q14687 1217 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 NBPF11Q86T75 865 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 ALG1Q9BT22 464 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 STX8Q9UNK0 236 aa20.52■□□□□ 0.88
SHKBP1-224ENST00000600718 AKR1B1P15121 316 aa20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 GMPSP49915 693 aaPredicted RBP20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 FOXD4L6Q3SYB3 417 aaPredicted RBP20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 FOXD4L3Q6VB84 417 aaPredicted RBP20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 FERMT3Q86UX7 667 aa20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 FBXO18Q8NFZ0 1043 aa20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 CEP95Q96GE4 821 aa20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 GJA3Q9Y6H8 435 aa20.52■□□□□ 0.87
SHKBP1-224ENST00000600718 IGKV6D-41A0A0C4DH26 115 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 WNT10BO00744 389 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 TOP1P11387 765 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 RESTQ13127 1097 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 SKOR2Q2VWA4 1001 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 PPP4R3BQ5MIZ7 849 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 FAM83AQ86UY5 434 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 CHAMP1Q96JM3 812 aa20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 RNF26Q9BY78 433 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-224ENST00000600718 TRAK2O60296 914 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 DEXIO95424 95 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 FOSBP53539 338 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 DNAJC18Q9H819 358 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 LMBRD1Q9NUN5 540 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 MTMR4Q9NYA4 1195 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 FUT2Q10981 343 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 TATDN1Q6P1N9 297 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 TMTC3Q6ZXV5 915 aa20.5■□□□□ 0.87
SHKBP1-224ENST00000600718 PRPF3O43395 683 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 PRPF40AO75400 957 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 GNAQP50148 359 aa20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 AKAP17AQ02040 695 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 GUCY1B3Q02153 619 aa20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 GRM4Q14833 912 aa20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 CERKLQ49MI3 558 aaPredicted RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 CSRNP1Q96S65 589 aa20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 VEZTQ9HBM0 779 aa20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 HERC5Q9UII4 1024 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 CNOT7Q9UIV1 285 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-224ENST00000600718 CNTNAP1P78357 1384 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 SHTN1A0MZ66 631 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 DNM1Q05193 864 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 TRIM29Q14134 588 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 NBPF9Q3BBW0 867 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 MICALL2Q8IY33 904 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 CMTR1Q8N1G2 835 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 CCDC82Q8N4S0 544 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 ZNF541Q9H0D2 1346 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 PLEKHA8P1O95397 391 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 CSPP1Q1MSJ5 1256 aa20.48■□□□□ 0.87
SHKBP1-224ENST00000600718 TTLL1O95922 423 aa20.47■□□□□ 0.87
SHKBP1-224ENST00000600718 KRT85P78386 507 aa20.47■□□□□ 0.87
SHKBP1-224ENST00000600718 TMEM87AQ8NBN3 555 aa20.47■□□□□ 0.87
SHKBP1-224ENST00000600718 AIFM3Q96NN9 605 aa20.47■□□□□ 0.87
SHKBP1-224ENST00000600718 CNPY2Q9Y2B0 182 aa20.47■□□□□ 0.87
SHKBP1-224ENST00000600718 MPHOSPH10O00566 681 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 TNNI2P48788 182 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 RBM26Q5T8P6 1007 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 OTUD7BQ6GQQ9 843 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 SRBD1Q8N5C6 995 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 LZTS2Q9BRK4 669 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 SIPA1L1O43166 1804 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 H7C1D1 291 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 SLURP2P0DP57 97 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 NCLP19338 710 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 KRT40Q6A162 431 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 GPC2Q8N158 579 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 MAD2L2Q9UI95 211 aa20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 V9GY48 417 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-224ENST00000600718 PALM3A6NDB9 673 aaPredicted RBP20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 FAM196BA6NMK8 535 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 GUCY1A2P33402 732 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 USP48Q86UV5 1035 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 RBM27Q9P2N5 1060 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 CLIP2Q9UDT6 1046 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 TBC1D12O60347 775 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 TNFAIP1Q13829 316 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 ATL3Q6DD88 541 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 FAM173BQ6P4H8 233 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 KANSL2Q9H9L4 492 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 GJB4Q9NTQ9 266 aa20.45■□□□□ 0.86
SHKBP1-224ENST00000600718 YBX3P16989 372 aaKnown RBP eCLIP20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 ABCB5Q2M3G0 1257 aa20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 TMEM179Q6ZVK1 233 aa20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 SAMD7Q7Z3H4 446 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms