RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 PIGSQ96S52 555 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 ZSCAN16Q9H4T2 348 aaPredicted RBP11.8□□□□□ -0.52
RFFL-212ENST00000584655 SERTAD1Q9UHV2 236 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 SERPINC1P01008 464 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 SP4Q02446 784 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 CPXCR1Q8N123 301 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 C16orf45Q96MC5 204 aaPredicted RBP11.8□□□□□ -0.52
RFFL-212ENST00000584655 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.8□□□□□ -0.522e-8■■■■■ 28.1
RFFL-212ENST00000584655 COL1A1P02452 1464 aaPredicted RBP11.8□□□□□ -0.52
RFFL-212ENST00000584655 ATP1A3P13637 1013 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 CCDC173Q0VFZ6 552 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 ENOX2Q16206 610 aaKnown RBP11.8□□□□□ -0.52
RFFL-212ENST00000584655 LINC00301Q8NCQ3 95 aa11.8□□□□□ -0.52
RFFL-212ENST00000584655 XBP1P17861 261 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.79□□□□□ -0.52
RFFL-212ENST00000584655 LDHCP07864 332 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 SRGNP10124 158 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 ZNF445P59923 1031 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
RFFL-212ENST00000584655 RC3H1Q5TC82 1133 aaKnown RBP11.79□□□□□ -0.52
RFFL-212ENST00000584655 SMARCC2Q8TAQ2 1214 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 TMEM47Q9BQJ4 181 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 BRCA2P51587 3418 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 CLSTN1O94985 981 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 CFAP100Q494V2 611 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 ILDR2Q71H61 639 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 NOSTRINQ8IVI9 506 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 KCNB2Q92953 911 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 CSRNP2Q9H175 543 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.79□□□□□ -0.52
RFFL-212ENST00000584655 V9GYY5 206 aaPredicted RBP11.79□□□□□ -0.52
RFFL-212ENST00000584655 ARFGEF2Q9Y6D5 1785 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 TOGARAM1Q9Y4F4 1720 aa11.79□□□□□ -0.52
RFFL-212ENST00000584655 MROH7-TTC4A0A0A0MT08 1334 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 ECE2O60344 883 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 IDEP14735 1019 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 TXKP42681 527 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 PDE4CQ08493 712 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 TSGA10IPQ3SY00 556 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 UBE2Q2Q8WVN8 375 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 TBC1D7Q9P0N9 293 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 PRR29P0C7W0 189 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 DPEP1P16444 411 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 PTGDRQ13258 359 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 SOGA3Q5TF21 947 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 CCDC174Q6PII3 467 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 HPS3Q969F9 1004 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 IL17RBQ9NRM6 502 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 CACNA1FO60840 1977 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 CCDC196A0A1B0GTZ2 297 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 ATP2B4P23634 1241 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 SH2D3AQ9BRG2 576 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 BRMS1Q9HCU9 246 aa11.78□□□□□ -0.52
RFFL-212ENST00000584655 KCNH3Q9ULD8 1083 aa11.77□□□□□ -0.52
RFFL-212ENST00000584655 LEMD3Q9Y2U8 911 aa11.77□□□□□ -0.52
RFFL-212ENST00000584655 DOT1LQ8TEK3 1739 aa11.77□□□□□ -0.52
RFFL-212ENST00000584655 TRIM75PA6NK02 468 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 BBOX1O75936 387 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 HOXA13P31271 388 aaPredicted RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 SEPT2Q15019 361 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 KARSQ15046 597 aaKnown RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 STAG1Q8WVM7 1258 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.77□□□□□ -0.539e-9■■■■■ 111.8
RFFL-212ENST00000584655 IFNKQ9P0W0 207 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 SEC63Q9UGP8 760 aaKnown RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 CCNT1O60563 726 aaKnown RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 TYW1BQ6NUM6 668 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 TMC6Q7Z403 805 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 TDRD7Q8NHU6 1098 aaKnown RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.77□□□□□ -0.53
RFFL-212ENST00000584655 TEKT1Q969V4 418 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 PKNOX2Q96KN3 472 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 PRMT6Q96LA8 375 aaPredicted RBP11.77□□□□□ -0.53
RFFL-212ENST00000584655 FEZ1Q99689 392 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 DNAH12Q6ZR08 3092 aa11.77□□□□□ -0.53
RFFL-212ENST00000584655 DDTLA6NHG4 134 aaPredicted RBP11.76□□□□□ -0.53
RFFL-212ENST00000584655 CHMP4BP1P59074 171 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 MAEAQ7L5Y9 396 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 CLSTN2Q9H4D0 955 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 ZBTB21Q9ULJ3 1066 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 FLT1P17948 1338 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L15C9J2P7 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L13C9JLJ4 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L11C9JVI0 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L18D6R9N7 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L22D6RA61 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L17D6RBQ6 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L19D6RCP7 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L20D6RJB6 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 DEXIO95424 95 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 KRT2P35908 639 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 FAM160A1Q05DH4 1040 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L24Q0WX57 530 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 SLC15A2Q16348 729 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 SLC10A5Q5PT55 438 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 USP17L6PQ6QN14 398 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 SHC4Q6S5L8 630 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 CSRNP1Q96S65 589 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 PNPLA7Q6ZV29 1317 aa11.76□□□□□ -0.53
RFFL-212ENST00000584655 CHMP2AO43633 222 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms