RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 RASGRF1Q13972 1273 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 KIF4BQ2VIQ3 1234 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 ZNF569Q5MCW4 686 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 HELBQ8NG08 1087 aaPredicted RBP13.87□□□□□ -0.19
SHMT1-208ENST00000582352 TUBB2BQ9BVA1 445 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 RNF41Q9H4P4 317 aaPredicted RBP13.87□□□□□ -0.19
SHMT1-208ENST00000582352 ADD3Q9UEY8 706 aaKnown RBP13.87□□□□□ -0.19
SHMT1-208ENST00000582352 SLC4A4Q9Y6R1 1079 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 MROH5Q6ZUA9 1318 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 COL5A2P05997 1499 aaPredicted RBP13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TOGARAM1Q9Y4F4 1720 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TULP2O00295 520 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CUL4BQ13620 913 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 MUM1L1Q5H9M0 696 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CDKAL1Q5VV42 579 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 ANKRD36CQ5JPF3 1778 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 SEMA3EO15041 775 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 PRKAB2O43741 272 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 PDE8AO60658 829 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CD44P16070 742 aaKnown RBP13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CASP14P31944 242 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TUBB4BP68371 445 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 RAD51AP2Q09MP3 1159 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 RASGRP2Q7LDG7 609 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 CCDC51Q96ER9 411 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 EPSTI1Q96J88 318 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 MTA3Q9BTC8 594 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TSPYL1Q9H0U9 437 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TMEM51Q9NW97 253 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 TTF2Q9UNY4 1162 aaKnown RBP13.86□□□□□ -0.19
SHMT1-208ENST00000582352 RTL9Q8NET4 1388 aa13.86□□□□□ -0.19
SHMT1-208ENST00000582352 A0A087X0B3 334 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 PBX1P40424 430 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 LCORLQ8N3X6 602 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 HNRNPLLQ8WVV9 542 aaKnown RBP13.85□□□□□ -0.19
SHMT1-208ENST00000582352 SYMPKQ92797 1274 aaKnown RBP13.85□□□□□ -0.19
SHMT1-208ENST00000582352 EXOC4Q96A65 974 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 PAGE5Q96GU1 130 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 TRERF1Q96PN7 1200 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 GSDMAQ96QA5 445 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 RNF26Q9BY78 433 aaPredicted RBP13.85□□□□□ -0.19
SHMT1-208ENST00000582352 ANKZF1Q9H8Y5 726 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 H3BQF6 201 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 MAP2K7O14733 419 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 EIF3JO75822 258 aaKnown RBP13.85□□□□□ -0.19
SHMT1-208ENST00000582352 BMP15O95972 392 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 KRT2P35908 639 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 LMAN1P49257 510 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 MCM6Q14566 821 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 HDXQ7Z353 690 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 SMYD4Q8IYR2 804 aaPredicted RBP13.85□□□□□ -0.19
SHMT1-208ENST00000582352 ASAP1Q9ULH1 1129 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 LRP5O75197 1615 aa13.85□□□□□ -0.19
SHMT1-208ENST00000582352 A0A0U1RQJ8 604 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 GYPCP04921 128 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 FGFR2P21802 821 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 CASP1P29466 404 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 ZSCAN26Q16670 478 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 ATRIPQ8WXE1 791 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 FERMT2Q96AC1 680 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 CWC15Q9P013 229 aaKnown RBP13.84□□□□□ -0.19
SHMT1-208ENST00000582352 VPS54Q9P1Q0 977 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 ADAM21Q9UKJ8 722 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 CTNND2Q9UQB3 1225 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 ITIH6Q6UXX5 1313 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 PNPLA7Q6ZV29 1317 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 FAM205CA6NFA0 338 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 CCT6AP40227 531 aaKnown RBP13.84□□□□□ -0.19
SHMT1-208ENST00000582352 GYS2P54840 703 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 CARD10Q9BWT7 1032 aa13.84□□□□□ -0.19
SHMT1-208ENST00000582352 USP5P45974 858 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 DPYDQ12882 1025 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 BEND6Q5SZJ8 279 aaPredicted RBP13.83□□□□□ -0.19
SHMT1-208ENST00000582352 SH3RF1Q7Z6J0 888 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 SLC35F6Q8N357 371 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 MSANTD4Q8NCY6 345 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 BBXQ8WY36 941 aaPredicted RBP13.83□□□□□ -0.19
SHMT1-208ENST00000582352 NAPGQ99747 312 aaPredicted RBP13.83□□□□□ -0.19
SHMT1-208ENST00000582352 BRMS1Q9HCU9 246 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 PSD3Q9NYI0 1048 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 RAB21Q9UL25 225 aa13.83□□□□□ -0.19
SHMT1-208ENST00000582352 MYH8P13535 1937 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 FXR1P51114 621 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT1-208ENST00000582352 PPP2R5BQ15173 497 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 TMTC1Q8IUR5 882 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 MIGA1Q8NAN2 632 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 ACRBPQ8NEB7 543 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 PNKPQ96T60 521 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 PDE11AQ9HCR9 933 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 TNKSO95271 1327 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 PPARAQ07869 468 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 ANKRD20A12PQ8NF67 263 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 ESR2Q92731 530 aa13.83□□□□□ -0.2
SHMT1-208ENST00000582352 CDC5LQ99459 802 aaKnown RBP13.83□□□□□ -0.2
SHMT1-208ENST00000582352 BCORQ6W2J9 1755 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 CTAGE15A4D2H0 777 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 PPP1R3GB7ZBB8 358 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 N4BP3O15049 544 aa13.82□□□□□ -0.2
SHMT1-208ENST00000582352 CTAGE8P0CG41 777 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms