RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	KIF4B	Q2VIQ3	1234 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZNF576	Q9H609	170 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	CCDC86	Q9H6F5	360 aa	Known RBP	3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	SEPT3	Q9UH03	358 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	POLI	Q9UNA4	740 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	PZP	P20742	1482 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	SAMD9L	Q8IVG5	1584 aa		3.96	□□□□□ -1.78
PTCH1-223	ENST00000551623	TRO	Q12816	1431 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ATP7A	Q04656	1500 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ARHGAP5	Q13017	1502 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	KIF14	Q15058	1648 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	PREX2	Q70Z35	1606 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	STRCP1	A6NGW2	1772 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZC3H13	Q5T200	1668 aa	Known RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	INO80	Q9ULG1	1556 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	LRRC9	Q6ZRR7	1453 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623		A0A1W2PP55	124 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	GNAT3	A8MTJ3	354 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	POLR3D	P05423	398 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	NEFM	P07197	916 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ADRB1	P08588	477 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	EIF1AX	P47813	144 aa	Known RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	EHHADH	Q08426	723 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	NPAS4	Q8IUM7	802 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	MARCH10	Q8NA82	808 aa	Predicted RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ABHD4	Q8TB40	342 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	HELQ	Q8TDG4	1101 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ISL2	Q96A47	359 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	CCDC120	Q96HB5	630 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZC3H12C	Q9C0D7	883 aa	Known RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZFYVE28	Q9HCC9	887 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	SSU72	Q9NP77	194 aa	Known RBP	3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	SLAIN2	Q9P270	581 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	FGD6	Q6ZV73	1430 aa		3.95	□□□□□ -1.78
PTCH1-223	ENST00000551623	IQGAP1	P46940	1657 aa		3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	ITSN2	Q9NZM3	1697 aa		3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	MPST	P25325	297 aa		3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	SRPK2	P78362	688 aa	Known RBP	3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	HNRNPU	Q00839	825 aa	Known RBP eCLIP	3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	ATP13A1	Q9HD20	1204 aa		3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	SUPT6H	Q7KZ85	1726 aa	Known RBP	3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	KIAA1107	Q9UPP5	1409 aa		3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	CLTC	Q00610	1675 aa	Known RBP	3.94	□□□□□ -1.78
PTCH1-223	ENST00000551623	UGGT1	Q9NYU2	1555 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	A2M	P01023	1474 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	CAMSAP2	Q08AD1	1489 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	ARHGAP23	Q9P227	1491 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	TNR	Q92752	1358 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	JCAD	Q9P266	1359 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	LRP6	O75581	1613 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	TRIM13	O60858	407 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	CELA3B	P08861	270 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	RAC2	P15153	192 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	ITPKA	P23677	461 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	TCERG1L	Q5VWI1	586 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	THEMIS	Q8N1K5	641 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	BAHD1	Q8TBE0	780 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	CLP1	Q92989	425 aa	Known RBP	3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	PRDM10	Q9NQV6	1147 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	SEMA3G	Q9NS98	782 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	KRT82	Q9NSB4	513 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZNF777	Q9ULD5	760 aa	Predicted RBP	3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	ABCC3	O15438	1527 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	MAP3K1	Q13233	1512 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	MIA2	Q96PC5	1412 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	SPATA31A6	Q5VVP1	1343 aa		3.93	□□□□□ -1.78
PTCH1-223	ENST00000551623	CDC42BPB	Q9Y5S2	1711 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	SLIT1	O75093	1534 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	SUPT5H	O00267	1087 aa	Known RBP	3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZNF772	Q68DY9	489 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	ALKBH2	Q6NS38	261 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	GALNT12	Q8IXK2	581 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	HSPA12B	Q96MM6	686 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	ALPK1	Q96QP1	1244 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	FOXQ1	Q9C009	403 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	XYLT2	Q9H1B5	865 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	XIRP1	Q702N8	1843 aa	Known RBP	3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	CLIP1	P30622	1438 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	FMN1	Q68DA7	1419 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	NKTR	P30414	1462 aa	Known RBP	3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	LRP5	O75197	1615 aa		3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	COL16A1	Q07092	1604 aa	Predicted RBP	3.92	□□□□□ -1.78
PTCH1-223	ENST00000551623	ROBO1	Q9Y6N7	1651 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	RTEL1-TNFRSF6B	F6WH68	1400 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	GSTP1	P09211	210 aa	Known RBP	3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	USP5	P45974	858 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	DLG4	P78352	724 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	ZXDC	Q2QGD7	858 aa	Predicted RBP	3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	TMEM164	Q5U3C3	297 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	ERICH6B	Q5W0A0	696 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	TTC6	Q86TZ1	520 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	RNF214	Q8ND24	703 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	CNOT6	Q9ULM6	557 aa	Known RBP	3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	CDK11A	Q9UQ88	783 aa	Predicted RBP	3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	PLEKHH2	Q8IVE3	1493 aa		3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	SCAF11	Q99590	1463 aa	Known RBP	3.91	□□□□□ -1.78
PTCH1-223	ENST00000551623	TIAM1	Q13009	1591 aa		3.9	□□□□□ -1.78
PTCH1-223	ENST00000551623	NWD1	Q149M9	1564 aa		3.9	□□□□□ -1.78

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