RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PAGE5Q96GU1 130 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 ZSCAN10Q96SZ4 725 aaPredicted RBP18.01■□□□□ 0.47
LDLR-204ENST00000545707 RNF26Q9BY78 433 aaPredicted RBP18.01■□□□□ 0.47
LDLR-204ENST00000545707 CCDC87Q9NVE4 849 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 NMT2O60551 498 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 CAMTA2O94983 1202 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 VEGFAP15692 232 aaPredicted RBP18.01■□□□□ 0.47
LDLR-204ENST00000545707 FUT2Q10981 343 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 C3orf67Q6ZVT6 689 aa18.01■□□□□ 0.47
LDLR-204ENST00000545707 APTXQ7Z2E3 356 aaKnown RBP18.01■□□□□ 0.47
LDLR-204ENST00000545707 ADAMTS3O15072 1205 aa18■□□□□ 0.47
LDLR-204ENST00000545707 NTSR2O95665 410 aa18■□□□□ 0.47
LDLR-204ENST00000545707 KRT2P35908 639 aa18■□□□□ 0.47
LDLR-204ENST00000545707 IFIT1BQ5T764 474 aaKnown RBP18■□□□□ 0.47
LDLR-204ENST00000545707 PHF20Q9BVI0 1012 aa18■□□□□ 0.47
LDLR-204ENST00000545707 LZTFL1Q9NQ48 299 aa18■□□□□ 0.47
LDLR-204ENST00000545707 COL4A1P02462 1669 aa18■□□□□ 0.47
LDLR-204ENST00000545707 A0A1B0GTH6 734 aa18■□□□□ 0.47
LDLR-204ENST00000545707 PLA2G4AP47712 749 aa18■□□□□ 0.47
LDLR-204ENST00000545707 RBL2Q08999 1139 aa18■□□□□ 0.47
LDLR-204ENST00000545707 KANK3Q6NY19 840 aa18■□□□□ 0.47
LDLR-204ENST00000545707 TRIML1Q8N9V2 468 aa18■□□□□ 0.47
LDLR-204ENST00000545707 AK7Q96M32 723 aa18■□□□□ 0.47
LDLR-204ENST00000545707 RIOK1Q9BRS2 568 aaKnown RBP18■□□□□ 0.47
LDLR-204ENST00000545707 BLZF1Q9H2G9 400 aa18■□□□□ 0.47
LDLR-204ENST00000545707 ZSWIM4Q9H7M6 989 aa18■□□□□ 0.47
LDLR-204ENST00000545707 AATFQ9NY61 560 aaKnown RBP eCLIP18■□□□□ 0.47
LDLR-204ENST00000545707 ABCA3Q99758 1704 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 ANKRD36CQ5JPF3 1778 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 DPYDQ12882 1025 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 SLC4A8Q2Y0W8 1093 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 TEX35Q5T0J7 233 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 ZNF384Q8TF68 577 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 LRP5O75197 1615 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 EFCAB8A8MWE9 144 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 MAP3K9P80192 1104 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 ITPK1Q13572 414 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 TMCO3Q6UWJ1 677 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 RAD9BQ6WBX8 426 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 SMIM5Q71RC9 77 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 IGSF22Q8N9C0 903 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 KIFC2Q96AC6 838 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 CHD4Q14839 1912 aa17.99■□□□□ 0.47
LDLR-204ENST00000545707 AKR1B15C9JRZ8 316 aaPredicted RBP17.98■□□□□ 0.47
LDLR-204ENST00000545707 ERCC5P28715 1186 aaPredicted RBP17.98■□□□□ 0.47
LDLR-204ENST00000545707 CUL4BQ13620 913 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 CATIPQ7Z7H3 387 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 CREBRFQ8IUR6 639 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 TIAM2Q8IVF5 1701 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 BAZ2BQ9UIF8 2168 aaKnown RBP17.98■□□□□ 0.47
LDLR-204ENST00000545707 ZRANB2O95218 330 aaKnown RBP eCLIP17.98■□□□□ 0.47
LDLR-204ENST00000545707 XBP1P17861 261 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 PPP2R3AQ06190 1150 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 TROAPQ12815 778 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 NPY5RQ15761 445 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 FAM47AQ5JRC9 791 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 SPATA1Q5VX52 437 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 CCDC12Q8WUD4 166 aaPredicted RBP17.98■□□□□ 0.47
LDLR-204ENST00000545707 ZBTB9Q96C00 473 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 SRRTQ9BXP5 876 aaKnown RBP17.98■□□□□ 0.47
LDLR-204ENST00000545707 SYNRGQ9UMZ2 1314 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 DISP2A7MBM2 1401 aa17.98■□□□□ 0.47
LDLR-204ENST00000545707 ERICH4A6NGS2 130 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 USP17L12C9JPN9 530 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 USP17L21D6R901 530 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 CCT6AP40227 531 aaKnown RBP17.97■□□□□ 0.47
LDLR-204ENST00000545707 PTGDRQ13258 359 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 ANAPC4Q9UJX5 808 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 MRFAP1Q9Y605 127 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 RTL9Q8NET4 1388 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 PPP1R3GB7ZBB8 358 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 PRPF3O43395 683 aaKnown RBP17.97■□□□□ 0.47
LDLR-204ENST00000545707 COL1A1P02452 1464 aaPredicted RBP17.97■□□□□ 0.47
LDLR-204ENST00000545707 CDC25AP30304 524 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 SH3RF1Q7Z6J0 888 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 SRBD1Q8N5C6 995 aaKnown RBP17.97■□□□□ 0.47
LDLR-204ENST00000545707 DOCK2Q92608 1830 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 MTA3Q9BTC8 594 aa17.97■□□□□ 0.47
LDLR-204ENST00000545707 KLRK1P26718 216 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 CASP14P31944 242 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 TTC38Q5R3I4 469 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 CTR9Q6PD62 1173 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 PPFIBP1Q86W92 1011 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 ARGLU1Q9NWB6 273 aaPredicted RBP17.96■□□□□ 0.47
LDLR-204ENST00000545707 ADD3Q9UEY8 706 aaKnown RBP17.96■□□□□ 0.47
LDLR-204ENST00000545707 CTNND2Q9UQB3 1225 aa17.96■□□□□ 0.47
LDLR-204ENST00000545707 LOC102724428A0A0B4J2F2 783 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 POLR3GO15318 223 aaPredicted RBP17.96■□□□□ 0.46
LDLR-204ENST00000545707 SASH3O75995 380 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 RCAN1P53805 252 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 SIK1P57059 783 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 PARP10Q53GL7 1025 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 PIK3AP1Q6ZUJ8 805 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 JAG2Q9Y219 1238 aa17.96■□□□□ 0.46
LDLR-204ENST00000545707 ABL1P00519 1130 aa17.95■□□□□ 0.46
LDLR-204ENST00000545707 TFRCP02786 760 aaKnown RBP17.95■□□□□ 0.46
LDLR-204ENST00000545707 KCNQ4P56696 695 aa17.95■□□□□ 0.46
LDLR-204ENST00000545707 ERFEQ4G0M1 354 aa17.95■□□□□ 0.46
LDLR-204ENST00000545707 BICDL1Q6ZP65 573 aa17.95■□□□□ 0.46
LDLR-204ENST00000545707 IQCA1Q86XH1 822 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms