RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 VSTM4Q8IW00 320 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 MKNK2Q9HBH9 465 aa15.43■□□□□ 0.06
PTPN1-202ENST00000541713 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.43■□□□□ 0.065e-13■■□□□ 12.3
PTPN1-202ENST00000541713 ATP2B2Q01814 1243 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 SRBD1Q8N5C6 995 aaKnown RBP15.42■□□□□ 0.06
PTPN1-202ENST00000541713 IGSF22Q8N9C0 903 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 PCMTD1Q96MG8 357 aaPredicted RBP15.42■□□□□ 0.06
PTPN1-202ENST00000541713 TUBE1Q9UJT0 475 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 NTSR2O95665 410 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 MAPKAPK5Q8IW41 473 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 GDAQ9Y2T3 454 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 TRIM49BA6NDI0 452 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 N4BP3O15049 544 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 CASQ1P31415 396 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 TFAP4Q01664 338 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 RBL2Q08999 1139 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 TTC38Q5R3I4 469 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 CTR9Q6PD62 1173 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 ACRBPQ8NEB7 543 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 ZNF384Q8TF68 577 aa15.42■□□□□ 0.06
PTPN1-202ENST00000541713 STAG1Q8WVM7 1258 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 ERO1AQ96HE7 468 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 SLURP2P0DP57 97 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 CASP14P31944 242 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 CUL4BQ13620 913 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 SMAP1Q8IYB5 467 aaPredicted RBP15.41■□□□□ 0.06
PTPN1-202ENST00000541713 ZNF397Q8NF99 534 aaPredicted RBP15.41■□□□□ 0.06
PTPN1-202ENST00000541713 IMPACTQ9P2X3 320 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 ABCC12Q96J65 1359 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 GRIK5Q16478 980 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 TGFBRAP1Q8WUH2 860 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 NUP88Q99567 741 aaPredicted RBP15.41■□□□□ 0.06
PTPN1-202ENST00000541713 PRDM4Q9UKN5 801 aa15.41■□□□□ 0.06
PTPN1-202ENST00000541713 CLCN6P51797 869 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 DPYDQ12882 1025 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 PKN1Q16512 942 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 FKBP15Q5T1M5 1219 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 HPS3Q969F9 1004 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 PAGE5Q96GU1 130 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 GDAP1L1Q96MZ0 367 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 MRPL44Q9H9J2 332 aaKnown RBP15.4■□□□□ 0.06
PTPN1-202ENST00000541713 BRMS1Q9HCU9 246 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 ERVV-1B6SEH8 477 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 SPECC1LQ69YQ0 1117 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 RHOXF2BP0C7M4 288 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 SAMD1Q6SPF0 538 aaPredicted RBP15.4■□□□□ 0.06
PTPN1-202ENST00000541713 CLEC10AQ8IUN9 316 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 LINC00116Q8NCU8 138 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 NGLY1Q96IV0 654 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 RHOXF2Q9BQY4 288 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 ZNF446Q9NWS9 450 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 OGFRQ9NZT2 677 aa15.4■□□□□ 0.06
PTPN1-202ENST00000541713 IKBKBO14920 756 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 HIBADHP31937 336 aaKnown RBP15.39■□□□□ 0.05
PTPN1-202ENST00000541713 RPS8P62241 208 aaKnown RBP15.39■□□□□ 0.05
PTPN1-202ENST00000541713 INF2Q27J81 1249 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 ZNF569Q5MCW4 686 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 WWC2Q6AWC2 1192 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 SETDB2Q96T68 719 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 ALS2Q96Q42 1657 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 BCL9O00512 1426 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 AMIGO3Q86WK7 504 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 SYNRGQ9UMZ2 1314 aa15.39■□□□□ 0.05
PTPN1-202ENST00000541713 ACTN4O43707 911 aaKnown RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 ZPR1O75312 459 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 TC2NQ8N9U0 490 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 NLRP3Q96P20 1036 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 SLF1Q9BQI6 1058 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 GNAT2P19087 354 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 DNA2P51530 1060 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 MRPS25P82663 173 aaKnown RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 PPARDQ03181 441 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 KCTD19Q17RG1 926 aaPredicted RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 KIF4BQ2VIQ3 1234 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 REXO1L1PQ8IX06 675 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 UBA5Q9GZZ9 404 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 KAT14Q9H8E8 782 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 SRPRBQ9Y5M8 271 aaKnown RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 NWD2Q9ULI1 1742 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 MDM2Q00987 491 aaPredicted RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 PICALMQ13492 652 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 ENOX2Q16206 610 aaKnown RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 RIOK1Q9BRS2 568 aaKnown RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 FOXP1Q9H334 677 aaPredicted RBP15.38■□□□□ 0.05
PTPN1-202ENST00000541713 ZNF652Q9Y2D9 606 aa15.38■□□□□ 0.05
PTPN1-202ENST00000541713 PHACTR2O75167 634 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 GJA10Q969M2 543 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.37■□□□□ 0.05
PTPN1-202ENST00000541713 TRIM10Q9UDY6 481 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 DDX41Q9UJV9 622 aaKnown RBP15.37■□□□□ 0.05
PTPN1-202ENST00000541713 CEP131Q9UPN4 1083 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 COL18A1P39060 1754 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 ENC1O14682 589 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 DMTNQ08495 405 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 MCM6Q14566 821 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 NFIXQ14938 502 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 KRT222Q8N1A0 295 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 TIGD1Q96MW7 591 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 DCP1AQ9NPI6 582 aaPredicted RBP15.37■□□□□ 0.05
PTPN1-202ENST00000541713 ZNF219Q9P2Y4 722 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms