RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 YY1P25490 414 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 PSMA5P28066 241 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 TFAP4Q01664 338 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 EXOSC10Q01780 885 aaKnown RBP11.03□□□□□ -0.64
DDX55-208ENST00000541259 TRDNQ13061 729 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 PRKG1Q13976 671 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 TATDN1Q6P1N9 297 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 BLOC1S2Q6QNY1 142 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 RUFY3Q7L099 469 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 RALYLQ86SE5 291 aaKnown RBP11.03□□□□□ -0.64
DDX55-208ENST00000541259 ZNF444Q8N0Y2 327 aaPredicted RBP11.03□□□□□ -0.64
DDX55-208ENST00000541259 ZKSCAN3Q9BRR0 538 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 TRIM34Q9BYJ4 488 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 KRT23Q9C075 422 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 CNNM2Q9H8M5 875 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 GPHNQ9NQX3 736 aaPredicted RBP11.03□□□□□ -0.64
DDX55-208ENST00000541259 HERC5Q9UII4 1024 aaKnown RBP11.03□□□□□ -0.64
DDX55-208ENST00000541259 DOCK1Q14185 1865 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 PAPPA2Q9BXP8 1791 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 PHIPQ8WWQ0 1821 aa11.02□□□□□ -0.64
DDX55-208ENST00000541259 PHF20L1A8MW92 1017 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 PRC1O43663 620 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 NMT2O60551 498 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 USP2O75604 605 aaPredicted RBP11.02□□□□□ -0.65
DDX55-208ENST00000541259 PCP11498 1178 aaKnown RBP11.02□□□□□ -0.65
DDX55-208ENST00000541259 NEK4P51957 841 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 SUPT20HL1Q3ZLR7 823 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 CERKLQ49MI3 558 aaPredicted RBP11.02□□□□□ -0.65
DDX55-208ENST00000541259 DHX32Q7L7V1 743 aaKnown RBP11.02□□□□□ -0.65
DDX55-208ENST00000541259 ESR2Q92731 530 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.02□□□□□ -0.65
DDX55-208ENST00000541259 CYP46A1Q9Y6A2 500 aa11.02□□□□□ -0.65
DDX55-208ENST00000541259 TSPY2A6NKD2 308 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 CD2BP2O95400 341 aaKnown RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 ITGBL1O95965 494 aaPredicted RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 HMGB1P09429 215 aaKnown RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 TSPY3P0CV98 308 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 TSPY8P0CW00 308 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 MCM5P33992 734 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 RABEP1Q15276 862 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 Q6ZUG5 572 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 MOB2Q70IA6 237 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 CLEC10AQ8IUN9 316 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 ZNF784Q8NCA9 323 aaPredicted RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 NEDD1Q8NHV4 660 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 TTC14Q96N46 770 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 LARP6Q9BRS8 491 aaKnown RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 ZNF341Q9BYN7 854 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 ZNF287Q9HBT7 754 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 SENP2Q9HC62 589 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 IL17RBQ9NRM6 502 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 PDRG1Q9NUG6 133 aa11.01□□□□□ -0.65
DDX55-208ENST00000541259 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 RBM19Q9Y4C8 960 aaKnown RBP11.01□□□□□ -0.65
DDX55-208ENST00000541259 MPHOSPH10O00566 681 aaKnown RBP11□□□□□ -0.65
DDX55-208ENST00000541259 GH2P01242 217 aa11□□□□□ -0.65
DDX55-208ENST00000541259 INPP5BP32019 993 aa11□□□□□ -0.65
DDX55-208ENST00000541259 GUCY1A2P33402 732 aa11□□□□□ -0.65
DDX55-208ENST00000541259 TOB2Q14106 344 aaPredicted RBP11□□□□□ -0.65
DDX55-208ENST00000541259 ABCB5Q2M3G0 1257 aa11□□□□□ -0.65
DDX55-208ENST00000541259 DCAF15Q66K64 600 aa11□□□□□ -0.65
DDX55-208ENST00000541259 IGDCC4Q8TDY8 1250 aa11□□□□□ -0.65
DDX55-208ENST00000541259 ZKSCAN4Q969J2 545 aaPredicted RBP11□□□□□ -0.65
DDX55-208ENST00000541259 ZNF408Q9H9D4 720 aa11□□□□□ -0.65
DDX55-208ENST00000541259 ZNF112Q9UJU3 913 aa11□□□□□ -0.65
DDX55-208ENST00000541259 IGKV6D-41A0A0C4DH26 115 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 SH2B2O14492 632 aaPredicted RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 IFIT3O14879 490 aaKnown RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 CAP2P40123 477 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 AK2P54819 239 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 SEPT2Q15019 361 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 SEC23AQ15436 765 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 TMEM67Q5HYA8 995 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 RCSD1Q6JBY9 416 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 NOL8Q76FK4 1167 aaKnown RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 CCDC84Q86UT8 332 aaPredicted RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 ENAHQ8N8S7 591 aaPredicted RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 KLRG1Q96E93 195 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 HOOK2Q96ED9 719 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 CEP95Q96GE4 821 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 CCDC17Q96LX7 622 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 WRNIP1Q96S55 665 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 ZSCAN10Q96SZ4 725 aaPredicted RBP10.99□□□□□ -0.65
DDX55-208ENST00000541259 LY9Q9HBG7 655 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 TNKSO95271 1327 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 PLIN4Q96Q06 1357 aa10.99□□□□□ -0.65
DDX55-208ENST00000541259 CTNND1O60716 968 aaKnown RBP10.98□□□□□ -0.65
DDX55-208ENST00000541259 NF2P35240 595 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 APOBRQ0VD83 1088 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 RAB3GAP1Q15042 981 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.98□□□□□ -0.65
DDX55-208ENST00000541259 IQCA1Q86XH1 822 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 SIAH1Q8IUQ4 282 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.98□□□□□ -0.65
DDX55-208ENST00000541259 TMC2Q8TDI7 906 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 BRF1Q92994 677 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 UBAC1Q9BSL1 405 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 AGXT2Q9BYV1 514 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 ALDH8A1Q9H2A2 487 aaPredicted RBP10.98□□□□□ -0.65
DDX55-208ENST00000541259 CABP5Q9NP86 173 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms