RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 COL4A5P29400 1685 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 COL2A1P02458 1487 aaPredicted RBP18.6■□□□□ 0.57
NUP54-214ENST00000514307 MPHOSPH10O00566 681 aaKnown RBP18.6■□□□□ 0.57
NUP54-214ENST00000514307 FMNL1O95466 1100 aaPredicted RBP18.6■□□□□ 0.57
NUP54-214ENST00000514307 F13A1P00488 732 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 SHMT1P34896 483 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 NOVP48745 357 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 NTRK3Q16288 839 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 NBPF9Q3BBW0 867 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 SH3BP5LQ7L8J4 393 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 RAB11FIP4Q86YS3 637 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 HOOK2Q96ED9 719 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 C8orf76Q96K31 380 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 TMEM47Q9BQJ4 181 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 MYL10Q9BUA6 226 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 KANSL2Q9H9L4 492 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.6■□□□□ 0.57
NUP54-214ENST00000514307 MTMR4Q9NYA4 1195 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 RNF181Q9P0P0 153 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 RBM27Q9P2N5 1060 aaKnown RBP18.6■□□□□ 0.57
NUP54-214ENST00000514307 FER1L6Q2WGJ9 1857 aa18.6■□□□□ 0.57
NUP54-214ENST00000514307 STK36Q9NRP7 1315 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 DCAF8L1A6NGE4 600 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 TTLL1O95922 423 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 FDPSP14324 419 aaKnown RBP18.59■□□□□ 0.57
NUP54-214ENST00000514307 XBP1P17861 261 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 RXRAP19793 462 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 CSPP1Q1MSJ5 1256 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 FOXD4L5Q5VV16 416 aaPredicted RBP18.59■□□□□ 0.57
NUP54-214ENST00000514307 FOXD4L4Q8WXT5 416 aaPredicted RBP18.59■□□□□ 0.57
NUP54-214ENST00000514307 SLC26A6Q9BXS9 759 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 GPRC5DQ9NZD1 345 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 SCN9AQ15858 1988 aa18.59■□□□□ 0.57
NUP54-214ENST00000514307 PRPF3O43395 683 aaKnown RBP18.58■□□□□ 0.56
NUP54-214ENST00000514307 DEXIO95424 95 aa18.58■□□□□ 0.56
NUP54-214ENST00000514307 SMARCA1P28370 1054 aa18.58■□□□□ 0.56
NUP54-214ENST00000514307 LMOD1P29536 600 aaPredicted RBP18.58■□□□□ 0.56
NUP54-214ENST00000514307 SKOR2Q2VWA4 1001 aaPredicted RBP18.58■□□□□ 0.56
NUP54-214ENST00000514307 TMEM179Q6ZVK1 233 aa18.58■□□□□ 0.56
NUP54-214ENST00000514307 ALG1Q9BT22 464 aa18.58■□□□□ 0.56
NUP54-214ENST00000514307 RNF26Q9BY78 433 aaPredicted RBP18.58■□□□□ 0.56
NUP54-214ENST00000514307 CLIP2Q9UDT6 1046 aa18.58■□□□□ 0.56
NUP54-214ENST00000514307 BRCA1P38398 1863 aaKnown RBP18.58■□□□□ 0.56
NUP54-214ENST00000514307 AKR1B1P15121 316 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 YBX3P16989 372 aaKnown RBP eCLIP18.57■□□□□ 0.56
NUP54-214ENST00000514307 NBR1Q14596 966 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 ABCB5Q2M3G0 1257 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 KIF4BQ2VIQ3 1234 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 TBC1D10BQ4KMP7 808 aaPredicted RBP18.57■□□□□ 0.56
NUP54-214ENST00000514307 C9orf131Q5VYM1 1079 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 FBXO18Q8NFZ0 1043 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 CEP95Q96GE4 821 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 ANP32EQ9BTT0 268 aa18.57■□□□□ 0.56
NUP54-214ENST00000514307 PLIN4Q96Q06 1357 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 ZNF541Q9H0D2 1346 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 IGKV6D-41A0A0C4DH26 115 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 NCLP19338 710 aaKnown RBP18.56■□□□□ 0.56
NUP54-214ENST00000514307 RASA3Q14644 834 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 GRM4Q14833 912 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 ATL3Q6DD88 541 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 SAMD7Q7Z3H4 446 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 MKL1Q969V6 931 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 NYAP2Q9P242 653 aa18.56■□□□□ 0.56
NUP54-214ENST00000514307 PARP1P09874 1014 aaKnown RBP18.55■□□□□ 0.56
NUP54-214ENST00000514307 MAP3K10Q02779 954 aa18.55■□□□□ 0.56
NUP54-214ENST00000514307 SAFBQ15424 915 aaKnown RBP eCLIP18.55■□□□□ 0.56
NUP54-214ENST00000514307 MCTP1Q6DN14 999 aa18.55■□□□□ 0.56
NUP54-214ENST00000514307 TMTC3Q6ZXV5 915 aa18.55■□□□□ 0.56
NUP54-214ENST00000514307 APOBEC3FQ8IUX4 373 aaKnown RBP18.55■□□□□ 0.56
NUP54-214ENST00000514307 PHKBQ93100 1093 aa18.55■□□□□ 0.56
NUP54-214ENST00000514307 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.55■□□□□ 0.56
NUP54-214ENST00000514307 V9GY48 417 aaPredicted RBP18.55■□□□□ 0.56
NUP54-214ENST00000514307 BAZ2AQ9UIF9 1905 aaKnown RBP18.55■□□□□ 0.56
NUP54-214ENST00000514307 YY1P25490 414 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 NBPF11Q86T75 865 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 CCDC82Q8N4S0 544 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 GINM1Q9NU53 330 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 HACL1Q9UJ83 578 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 CFAP45Q9UL16 551 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 SYNPO2Q9UMS6 1093 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 CNTNAP1P78357 1384 aa18.54■□□□□ 0.56
NUP54-214ENST00000514307 ARFGEF1Q9Y6D6 1849 aa18.53■□□□□ 0.56
NUP54-214ENST00000514307 PALM3A6NDB9 673 aaPredicted RBP18.53■□□□□ 0.56
NUP54-214ENST00000514307 DTNBO60941 627 aa18.53■□□□□ 0.56
NUP54-214ENST00000514307 ZNF396Q96N95 335 aaPredicted RBP18.53■□□□□ 0.56
NUP54-214ENST00000514307 TMEM39BQ9GZU3 492 aa18.53■□□□□ 0.56
NUP54-214ENST00000514307 ADARB2Q9NS39 739 aaKnown RBP18.53■□□□□ 0.56
NUP54-214ENST00000514307 PPP2R3BQ9Y5P8 575 aa18.53■□□□□ 0.56
NUP54-214ENST00000514307 ZC3H4Q9UPT8 1303 aaKnown RBP18.52■□□□□ 0.56
NUP54-214ENST00000514307 SHTN1A0MZ66 631 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 KLRF2D3W0D1 207 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 DDNO94850 711 aaPredicted RBP18.52■□□□□ 0.56
NUP54-214ENST00000514307 ATP2B2Q01814 1243 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 GNL2Q13823 731 aaKnown RBP18.52■□□□□ 0.56
NUP54-214ENST00000514307 ASPRV1Q53RT3 343 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 DCAF15Q66K64 600 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 CDC37L1Q7L3B6 337 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 BRAPQ7Z569 592 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 FAM177A1Q8N128 213 aaPredicted RBP18.52■□□□□ 0.56
NUP54-214ENST00000514307 DEFB129Q9H1M3 183 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms