RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 ALFQ53S48 1182 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 OVOS1Q6IE37 1185 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF280DQ6N043 979 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 CCDC70Q6NSX1 233 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 TRIM67Q6ZTA4 783 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 CPXCR1Q8N123 301 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 ANKRD42Q8N9B4 389 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 ASAP3Q8TDY4 903 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 USP7Q93009 1102 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 MRGPRX2Q96LB1 330 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 ZFAND3Q9H8U3 227 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 AS3MTQ9HBK9 375 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 NGRNQ9NPE2 291 aaKnown RBP7.61□□□□□ -1.19
BRCA1-224ENST00000497488 LRRC4BQ9NT99 713 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 GMIPQ9P107 970 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 ZFATQ9P243 1243 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 LUC7L2Q9Y383 392 aaKnown RBP7.61□□□□□ -1.19
BRCA1-224ENST00000497488 TNPO3Q9Y5L0 923 aaKnown RBP7.61□□□□□ -1.19
BRCA1-224ENST00000497488 GJA3Q9Y6H8 435 aa7.61□□□□□ -1.19
BRCA1-224ENST00000497488 KLRG2A4D1S0 409 aaPredicted RBP7.6□□□□□ -1.19
BRCA1-224ENST00000497488 NEMP1O14524 444 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 KPNA6O60684 536 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 APBA3O96018 575 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 PSAPP07602 524 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 CT47B1P0C2W7 299 aaPredicted RBP7.6□□□□□ -1.19
BRCA1-224ENST00000497488 HOXD8P13378 290 aaPredicted RBP7.6□□□□□ -1.19
BRCA1-224ENST00000497488 BPIP17213 487 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 ARNTP27540 789 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 GBX1Q14549 363 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 SV2CQ496J9 727 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 SCARA3Q6AZY7 606 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 TOGARAM2Q6ZUX3 1019 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF598Q86UK7 904 aaKnown RBP7.6□□□□□ -1.19
BRCA1-224ENST00000497488 ATG4CQ96DT6 458 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 TRERF1Q96PN7 1200 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 IFT22Q9H7X7 185 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 CBX8Q9HC52 389 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 TCF7L1Q9HCS4 588 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 TLR7Q9NYK1 1049 aaKnown RBP7.6□□□□□ -1.19
BRCA1-224ENST00000497488 KCNH4Q9UQ05 1017 aa7.6□□□□□ -1.19
BRCA1-224ENST00000497488 A0A1B0GTH6 734 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 PDE2AO00408 941 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 APAF1O14727 1248 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 TNFRSF10CO14798 259 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZEB2O60315 1214 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF143P52747 638 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF280AP59817 542 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF252P-AS1Q0IIN9 211 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 POU4F2Q12837 409 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 MLECQ14165 292 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 SIM2Q14190 667 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF460Q14592 562 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 PTPN21Q16825 1174 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 GNPTABQ3T906 1256 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 COBLL1Q53SF7 1204 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 WDR44Q5JSH3 913 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 NLRC3Q7RTR2 1065 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 BRAPQ7Z569 592 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 SLC7A14Q8TBB6 771 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 PNMA5Q96PV4 448 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 SLC9A7Q96T83 725 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 INSM2Q96T92 566 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 HERPUD2Q9BSE4 406 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 EMILIN2Q9BXX0 1053 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 IRX2Q9BZI1 471 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 MUC3BQ9H195 1237 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 CLEC4MQ9H2X3 399 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 SUCOQ9UBS9 1254 aaKnown RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 KLF15Q9UIH9 416 aa7.59□□□□□ -1.19
BRCA1-224ENST00000497488 ZNF214Q9UL59 606 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 PNMA8BQ9ULN7 279 aaPredicted RBP7.59□□□□□ -1.19
BRCA1-224ENST00000497488 SLC26A4O43511 780 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 B3GALT4O96024 378 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 ASLP04424 464 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 FGFR1P11362 822 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 HALP42357 657 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 ID4P47928 161 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 PPP2R2AP63151 447 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 GRB10Q13322 594 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 SAFBQ15424 915 aaKnown RBP eCLIP7.58□□□□□ -1.2
BRCA1-224ENST00000497488 ABCB5Q2M3G0 1257 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 ZNF697Q5TEC3 545 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 SAMD5Q5TGI4 173 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 PI4K2BQ8TCG2 481 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 MENTQ9BUN1 341 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 CNNM2Q9H8M5 875 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 CRTAC1Q9NQ79 661 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 STRN4Q9NRL3 753 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 GTF2A1LQ9UNN4 478 aa7.58□□□□□ -1.2
BRCA1-224ENST00000497488 APOBEC2Q9Y235 224 aaKnown RBP7.58□□□□□ -1.2
BRCA1-224ENST00000497488 FAM86C2PA6NEL3 165 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 SLC22A31A6NKX4 558 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 OPA1O60313 960 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 ALDH1A1P00352 501 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 LDHCP07864 332 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 NAT2P11245 290 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 CDK8P49336 464 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 PPM1FP49593 454 aaPredicted RBP7.57□□□□□ -1.2
BRCA1-224ENST00000497488 PLAURQ03405 335 aa7.57□□□□□ -1.2
BRCA1-224ENST00000497488 GRM3Q14832 879 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms