RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 KANK3Q6NY19 840 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 HEATR3Q7Z4Q2 680 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 FBXO18Q8NFZ0 1043 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 CSRNP1Q96S65 589 aa9.62□□□□□ -0.87
USP54-215ENST00000497106 TRIM75PA6NK02 468 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 MAP3K11Q16584 847 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 RCSD1Q6JBY9 416 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 BRWD3Q6RI45 1802 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 RXRAP19793 462 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 ICA1Q05084 483 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 DNM1Q05193 864 aaKnown RBP9.61□□□□□ -0.87
USP54-215ENST00000497106 TMEM266Q2M3C6 531 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 CDC42EP5Q6NZY7 148 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 KRT25Q7Z3Z0 450 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 IGDCC4Q8TDY8 1250 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 PICK1Q9NRD5 415 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 CNPY2Q9Y2B0 182 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 LARGE1O95461 756 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 DACT2Q5SW24 774 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 FKBP1CQ5VVH2 108 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 DCAF4Q8WV16 495 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 V9GY48 417 aaPredicted RBP9.61□□□□□ -0.87
USP54-215ENST00000497106 ELP1O95163 1332 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 TAF1LQ8IZX4 1826 aa9.61□□□□□ -0.87
USP54-215ENST00000497106 BECN2A8MW95 431 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 SPTLC2O15270 562 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 SCG2P13521 617 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 MRPL12P52815 198 aaKnown RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 OLFM4Q6UX06 510 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 FOXP1Q9H334 677 aaPredicted RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 CCDC39Q9UFE4 941 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 TCP10L2B9ZVM9 353 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 ATP2B1P20020 1258 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 SMARCA1P28370 1054 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 SLC1A4P43007 532 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 GRM4Q14833 912 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 SUPT20HL1Q3ZLR7 823 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 CDC37L1Q7L3B6 337 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 ENAHQ8N8S7 591 aaPredicted RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 CHURC1Q8WUH1 139 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 CDK5RAP3Q96JB5 506 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 CLIP2Q9UDT6 1046 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 UBR3Q6ZT12 1888 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 PSDA5PKW4 1024 aaPredicted RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 PSMD14O00487 310 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 CHGBP05060 677 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 ANTXR2P58335 489 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 TMTC3Q6ZXV5 915 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 MRPS27Q92552 414 aaKnown RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 CYP2D7A0A087X1C5 515 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 CYP2D6P10635 497 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 ADD1P35611 737 aaKnown RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 TRAPPC10P48553 1259 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 DIS3L2Q8IYB7 885 aaKnown RBP9.6□□□□□ -0.87
USP54-215ENST00000497106 FAM151AQ8WW52 585 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 DYNLL2Q96FJ2 89 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 MYL10Q9BUA6 226 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 IDI2Q9BXS1 227 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 BRPF3Q9ULD4 1205 aa9.6□□□□□ -0.87
USP54-215ENST00000497106 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP54-215ENST00000497106 ADGRA1Q86SQ6 560 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 TMEM87AQ8NBN3 555 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 GRIN3BO60391 1043 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 SMC2O95347 1197 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 USP14P54578 494 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 PPP1R18Q6NYC8 613 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 HOMER1Q86YM7 354 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 CEP57L1Q8IYX8 460 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 FSIP1Q8NA03 581 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 GTPBP4Q9BZE4 634 aaKnown RBP9.59□□□□□ -0.87
USP54-215ENST00000497106 ARAP2Q8WZ64 1704 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 LMNB1P20700 586 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 ANO1Q5XXA6 986 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 PIBF1Q8WXW3 757 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 STK24Q9Y6E0 443 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 ROBO3Q96MS0 1386 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 KLRF2D3W0D1 207 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 VIL1P09327 827 aaKnown RBP9.59□□□□□ -0.87
USP54-215ENST00000497106 DDIT3P35638 169 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 UPF1Q92900 1129 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP54-215ENST00000497106 PHKBQ93100 1093 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 VAT1LQ9HCJ6 419 aa9.59□□□□□ -0.87
USP54-215ENST00000497106 FGRP09769 529 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 GPR162Q16538 588 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 MYSM1Q5VVJ2 828 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 CCAR1Q8IX12 1150 aaKnown RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 DCPSQ96C86 337 aaKnown RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 TFIP11Q9UBB9 837 aaKnown RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 A0A0U1RQG5 324 aaPredicted RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 TPM3P06753 285 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 DHX8Q14562 1220 aaKnown RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 NOSTRINQ8IVI9 506 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ANKS1AQ92625 1134 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 LRRC27Q9C0I9 530 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ZNF70Q9UC06 446 aaPredicted RBP9.58□□□□□ -0.88
USP54-215ENST00000497106 SYNPO2Q9UMS6 1093 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 LTBP3Q9NS15 1303 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ZNF76P36508 570 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 ADCY7P51828 1080 aa9.58□□□□□ -0.88
USP54-215ENST00000497106 PLCB2Q00722 1185 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms