RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TCP10Q12799 353 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 DPP8Q6V1X1 898 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 GOLGA6CA6NDK9 693 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 GOLGA6DP0CG33 693 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 ADD2P35612 726 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 ERFEQ4G0M1 354 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 CCDC122Q5T0U0 273 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 GOLGA6AQ9NYA3 693 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 HDAC9Q9UKV0 1011 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 KIAA1210Q9ULL0 1709 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 PCDHA7Q9UN72 937 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 ZC3H13Q5T200 1668 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 NRKQ7Z2Y5 1582 aa18.29■□□□□ 0.52
CCDC88B-209ENST00000494080 TBCAO75347 108 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 CCDC114Q96M63 670 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 PTPRUQ92729 1446 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 NCOA3Q9Y6Q9 1424 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 SPDYE3A6NKU9 549 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 PFKFB1P16118 471 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 KIF5AQ12840 1032 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 CCDC144BQ3MJ40 725 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 LONRF3Q496Y0 759 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 TRMT44Q8IYL2 757 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 USP27XA6NNY8 438 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 EZRP15311 586 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 ERMNQ8TAM6 284 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 ANKRD7Q92527 254 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 EHMT1Q9H9B1 1298 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 APOA5Q6Q788 366 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 VPS36Q86VN1 386 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 SYCP3Q8IZU3 236 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 CLIC4Q9Y696 253 aa18.28■□□□□ 0.52
CCDC88B-209ENST00000494080 LRRC27Q9C0I9 530 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 GOPCQ9HD26 462 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 ST7Q9NRC1 585 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 AGLP35573 1532 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 ACTN2P35609 894 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 KRT83P78385 493 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 GOLGA8FQ08AF8 430 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 GOLGA8DPQ0D2H9 430 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 PNOCQ13519 176 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 LONRF2Q1L5Z9 754 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 SPECC1LQ69YQ0 1117 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 CCDC121Q6ZUS5 278 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 SCLT1Q96NL6 688 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 CLIC6Q96NY7 704 aa18.27■□□□□ 0.52
CCDC88B-209ENST00000494080 GYS2P54840 703 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 UBXN1Q04323 297 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 PTPN21Q16825 1174 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 DPCR1Q3MIW9 517 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 NOSTRINQ8IVI9 506 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 ZMYM6O95789 1325 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 TACC1O75410 805 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 UBE4AQ14139 1066 aa18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 ZSCAN10Q96SZ4 725 aaPredicted RBP18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 PIH1D3Q9NQM4 214 aaKnown RBP18.27■□□□□ 0.51
CCDC88B-209ENST00000494080 TXKP42681 527 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 MCAMP43121 646 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 DYNLL1P63167 89 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 RABGGTAQ92696 567 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 VPS16Q9H269 839 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 ZCCHC17Q9NP64 241 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 TTF2Q9UNY4 1162 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 LUC7L2Q9Y383 392 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 MYO1CO00159 1063 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 RASGRF1Q13972 1273 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 TTLL12Q14166 644 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 MAP2K2P36507 400 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 SSR1P43307 286 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 NDUFA8P51970 172 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 PPP2R5BQ15173 497 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 FAM196AQ6ZSG2 479 aa18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 MYCBPQ99417 103 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 SRP68Q9UHB9 627 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-209ENST00000494080 ERVV-1B6SEH8 477 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 CCNT1O60563 726 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 ARID4AP29374 1257 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 LIG3P49916 1009 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 SPAG5Q96R06 1193 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 RIMBP3CA6NJZ7 1639 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 RIMBP3BA6NNM3 1639 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 RIMBP3Q9UFD9 1639 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 ZNF804BA4D1E1 1349 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 ATP8B1O43520 1251 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 NOP2P46087 812 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 RAD51AP2Q09MP3 1159 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 TUBB2AQ13885 445 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 WWC2Q6AWC2 1192 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 LCORLQ8N3X6 602 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 TUBB2BQ9BVA1 445 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 C1orf167Q5SNV9 1468 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 ARID5AQ03989 594 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 MSL1Q68DK7 614 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 IFT81Q8WYA0 676 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 FANCLQ9NW38 375 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 SERTAD1Q9UHV2 236 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 TMCO5BA8MYB1 307 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 VAV2P52735 878 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 POSTNQ15063 836 aa18.25■□□□□ 0.51
CCDC88B-209ENST00000494080 MROH2AA6NES4 1674 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms