RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 MCOLN1Q9GZU1 580 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 SSU72Q9NP77 194 aaKnown RBP5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 HHIPL2Q6UWX4 724 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 ZDHHC14Q8IZN3 488 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 TOP6BLQ8N6T0 577 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 BDH2Q9BUT1 245 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 CEP44Q9C0F1 390 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 C12orf49Q9H741 205 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 CACNA2D2Q9NY47 1150 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 SPG7Q9UQ90 795 aa5.08□□□□□ -1.6
DEPDC1-204ENST00000489862 DCDC2CA8MYV0 355 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 GIPC1O14908 333 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 LDHBP07195 334 aaKnown RBP5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 CELA3AP09093 270 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 USP17L7P0C7H9 530 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 ERVK-24P63145 666 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 ZNF827Q17R98 1081 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 PPM1JQ5JR12 505 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 C12orf40Q86WS4 652 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 RNF214Q8ND24 703 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 MYLIPQ8WY64 445 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 RNF19AQ9NV58 838 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 PPM1HQ9ULR3 514 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 SAMM50Q9Y512 469 aa5.07□□□□□ -1.6
DEPDC1-204ENST00000489862 LLGL2Q6P1M3 1020 aa5.06□□□□□ -1.6
DEPDC1-204ENST00000489862 IRF2BP1Q8IU81 584 aa5.06□□□□□ -1.6
DEPDC1-204ENST00000489862 HEXIM2Q96MH2 286 aaKnown RBP5.06□□□□□ -1.6
DEPDC1-204ENST00000489862 ALPK1Q96QP1 1244 aa5.06□□□□□ -1.6
DEPDC1-204ENST00000489862 FAM8A1Q9UBU6 413 aa5.06□□□□□ -1.6
DEPDC1-204ENST00000489862 TRIM37O94972 964 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 NKPD1Q17RQ9 610 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 PCNX4Q63HM2 1172 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 UBE3DQ7Z6J8 389 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 TTC6Q86TZ1 520 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 MRIQ9BWK5 157 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 PCDHA4Q9UN74 947 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 TEX51A0A1B0GUA7 166 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 NTF4P34130 210 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 PTPN11Q06124 597 aaPredicted RBP5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 RING1Q06587 406 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 LRRC14Q15048 493 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 FRMD5Q7Z6J6 570 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 ANKRD24Q8TF21 1146 aa5.05□□□□□ -1.6
DEPDC1-204ENST00000489862 PATL2C9JE40 543 aaKnown RBP5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 INPP5AQ14642 412 aa5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 SLC6A17Q9H1V8 727 aa5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 PICK1Q9NRD5 415 aa5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 CYP8B1Q9UNU6 501 aa5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 TTF2Q9UNY4 1162 aaKnown RBP5.04□□□□□ -1.6
DEPDC1-204ENST00000489862 ANKRD33BA6NCL7 494 aa5.03□□□□□ -1.6
DEPDC1-204ENST00000489862 GNA15P30679 374 aa5.03□□□□□ -1.6
DEPDC1-204ENST00000489862 AFF3P51826 1226 aaKnown RBP5.03□□□□□ -1.6
DEPDC1-204ENST00000489862 K7ESM1 405 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 PRPF40AO75400 957 aaKnown RBP5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 EIF4BP23588 611 aaKnown RBP5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 GDF5P43026 501 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 ZBTB37Q5TC79 503 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 LRFN4Q6PJG9 635 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 ELMO3Q96BJ8 720 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 FRMD6Q96NE9 622 aa5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 DUSP9Q99956 384 aaKnown RBP5.02□□□□□ -1.61
DEPDC1-204ENST00000489862 UNCXA6NJT0 531 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 MATN3O15232 486 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 FANCGO15287 622 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 CDK8P49336 464 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 CRB2Q5IJ48 1285 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 TTBK2Q6IQ55 1244 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 SND1Q7KZF4 910 aaKnown RBP eCLIP5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 SV2BQ7L1I2 683 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 CDC37L1Q7L3B6 337 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 FAM214BQ7L5A3 538 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 ZNF605Q86T29 641 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 ADAM7Q9H2U9 754 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 ATP13A1Q9HD20 1204 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 PRDM10Q9NQV6 1147 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 AK5Q9Y6K8 562 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 MYOCOSA0A1B0GUC4 107 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 PRAMEF27A3QJZ7 478 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 E9PSI1 815 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 CCDC85BQ15834 202 aaPredicted RBP5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 EAPPQ56P03 285 aaPredicted RBP5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 GAL3ST3Q96A11 431 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 PLPPR2Q96GM1 343 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 FOXQ1Q9C009 403 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 LUC7LQ9NQ29 371 aaKnown RBP5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 SLAMF8Q9P0V8 285 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 PCDHB5Q9Y5E4 795 aa5.01□□□□□ -1.61
DEPDC1-204ENST00000489862 SLC22A31A6NKX4 558 aa5□□□□□ -1.61
DEPDC1-204ENST00000489862 SSPNQ14714 243 aa5□□□□□ -1.61
DEPDC1-204ENST00000489862 SCARA3Q6AZY7 606 aa5□□□□□ -1.61
DEPDC1-204ENST00000489862 FBRSQ9HAH7 460 aa5□□□□□ -1.61
DEPDC1-204ENST00000489862 IRAK3Q9Y616 596 aa5□□□□□ -1.61
DEPDC1-204ENST00000489862 RBAK-RBAKDNI3L0D1 243 aa4.99□□□□□ -1.61
DEPDC1-204ENST00000489862 EOMESO95936 686 aa4.99□□□□□ -1.61
DEPDC1-204ENST00000489862 HPXP02790 462 aa4.99□□□□□ -1.61
DEPDC1-204ENST00000489862 PI3P19957 117 aa4.99□□□□□ -1.61
DEPDC1-204ENST00000489862 MAP3K11Q16584 847 aa4.99□□□□□ -1.61
DEPDC1-204ENST00000489862 MEI1Q5TIA1 1274 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms