RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 FAM177A1Q8N128 213 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-212ENST00000477970 OSBPL5Q9H0X9 879 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-212ENST00000477970 HOOK1Q9UJC3 728 aaKnown RBP14.04□□□□□ -0.16
PTPRF-212ENST00000477970 USP17L12C9JPN9 530 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 USP17L21D6R901 530 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 MYRIPQ8NFW9 859 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 KCNH3Q9ULD8 1083 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 ARFGEF1Q9Y6D6 1849 aa14.04□□□□□ -0.16
PTPRF-212ENST00000477970 UBE2Q2LH0YL09 131 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 GSDMDP57764 484 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 MDM2Q00987 491 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-212ENST00000477970 AKAP17AQ02040 695 aaKnown RBP14.03□□□□□ -0.16
PTPRF-212ENST00000477970 PDE4BQ07343 736 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 NCAPHQ15003 741 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 DRC7Q8IY82 874 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 FAM13BQ9NYF5 915 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 CNTNAP5Q8WYK1 1306 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 NFIXQ14938 502 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 NUP133Q8WUM0 1156 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 TCP11L1Q9NUJ3 509 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 PRDX5P30044 214 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 KRT2P35908 639 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 KANK3Q6NY19 840 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 LRRC8AQ8IWT6 810 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 TNFRSF25Q93038 417 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 PPP1R1BQ9UD71 204 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-212ENST00000477970 KCNJ14Q9UNX9 436 aa14.03□□□□□ -0.16
PTPRF-212ENST00000477970 ANKRD31Q8N7Z5 1873 aa14.02□□□□□ -0.16
PTPRF-212ENST00000477970 CT47A1Q5JQC4 288 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-212ENST00000477970 CD2APQ9Y5K6 639 aa14.02□□□□□ -0.16
PTPRF-212ENST00000477970 CCDC144BQ3MJ40 725 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 ZNF804AQ7Z570 1209 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 METTL16Q86W50 562 aaKnown RBP14.02□□□□□ -0.17
PTPRF-212ENST00000477970 DGKHQ86XP1 1220 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 TRIML1Q8N9V2 468 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 CNBD1Q8NA66 436 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 SHISA4Q96DD7 197 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 AATFQ9NY61 560 aaKnown RBP eCLIP14.02□□□□□ -0.17
PTPRF-212ENST00000477970 NRBP1Q9UHY1 535 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 UQCRHLA0A096LP55 91 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 UQCRHP07919 91 aa14.02□□□□□ -0.17
PTPRF-212ENST00000477970 KCNJ6P48051 423 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 C12orf60Q5U649 245 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 DZIP1Q86YF9 867 aaKnown RBP14.01□□□□□ -0.17
PTPRF-212ENST00000477970 MPNDQ8N594 471 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 CACTINQ8WUQ7 758 aaKnown RBP14.01□□□□□ -0.17
PTPRF-212ENST00000477970 CLIC6Q96NY7 704 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 BRMS1Q9HCU9 246 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 CYP2D7A0A087X1C5 515 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 TRAPPC10P48553 1259 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 SARSP49591 514 aaKnown RBP14.01□□□□□ -0.17
PTPRF-212ENST00000477970 SMIM5Q71RC9 77 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 TXNRD3Q86VQ6 643 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 FERMT2Q96AC1 680 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 SH3GLB2Q9NR46 395 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 PODXL2Q9NZ53 605 aa14.01□□□□□ -0.17
PTPRF-212ENST00000477970 LDHBP07195 334 aaKnown RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 LDHCP07864 332 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 ATP2B4P23634 1241 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 CNNM3Q8NE01 707 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 CTCFLQ8NI51 663 aaPredicted RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 SPATA20Q8TB22 786 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 SMIM22K7EJ46 135 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 RRP9O43818 475 aaKnown RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 IL1R1P14778 569 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 NPY5RQ15761 445 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 LONRF3Q496Y0 759 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 PRR5LQ6MZQ0 368 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 PCDHB6Q9Y5E3 794 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 KLRG2A4D1S0 409 aaPredicted RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 PLEKHA8P1O95397 391 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 BAG3O95817 575 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 HOXA10P31260 410 aaPredicted RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 KIF5BP33176 963 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 NR5A1Q13285 461 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 OXER1Q8TDS5 423 aa14□□□□□ -0.17
PTPRF-212ENST00000477970 ERCC4Q92889 916 aaPredicted RBP14□□□□□ -0.17
PTPRF-212ENST00000477970 TRIM75PA6NK02 468 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 MYL5Q02045 173 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 RCSD1Q6JBY9 416 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 TMC4Q7Z404 712 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 CCDC150Q8NCX0 1101 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 HSD3B7Q9H2F3 369 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 CHAF1AQ13111 956 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-212ENST00000477970 PFKFB3Q16875 520 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-212ENST00000477970 DNTTIP2Q5QJE6 756 aaKnown RBP13.99□□□□□ -0.17
PTPRF-212ENST00000477970 SYT17Q9BSW7 474 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 FHDC1Q9C0D6 1143 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-212ENST00000477970 DACH1Q9UI36 760 aa13.99□□□□□ -0.17
PTPRF-212ENST00000477970 FAM163AQ96GL9 167 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 CBFA2T2O43439 604 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 ACTN4O43707 911 aaKnown RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 ST5P78524 1137 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 LRMPQ12912 555 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 PNOCQ13519 176 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 POSTNQ15063 836 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 OLFM4Q6UX06 510 aa13.98□□□□□ -0.17
PTPRF-212ENST00000477970 CMTR1Q8N1G2 835 aaKnown RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 C17orf53Q8N3J3 647 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-212ENST00000477970 SRBD1Q8N5C6 995 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms