RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SHMT1P34896 483 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 ADD1P35611 737 aaKnown RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 NOVP48745 357 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 GMPSP49915 693 aaPredicted RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 GNAQP50148 359 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 CACNB3P54284 484 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 SSRP1Q08945 709 aaKnown RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 TROAPQ12815 778 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 NTRK3Q16288 839 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 RCSD1Q6JBY9 416 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 PNMA1Q8ND90 353 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 NUP133Q8WUM0 1156 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 DDX11Q96FC9 970 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 IL17RBQ9NRM6 502 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 RBM27Q9P2N5 1060 aaKnown RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 CNOT7Q9UIV1 285 aaKnown RBP14.93□□□□□ -0.02
VPS13D-205ENST00000473099 GJA3Q9Y6H8 435 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 SCN4AP35499 1836 aa14.93□□□□□ -0.02
VPS13D-205ENST00000473099 DDTLA6NHG4 134 aaPredicted RBP14.92□□□□□ -0.02
VPS13D-205ENST00000473099 BAG4O95429 457 aaKnown RBP14.92□□□□□ -0.02
VPS13D-205ENST00000473099 CDC27P30260 824 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 TATDN1Q6P1N9 297 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 MICALL2Q8IY33 904 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 CSRNP1Q96S65 589 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 MYL10Q9BUA6 226 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 RNF26Q9BY78 433 aaPredicted RBP14.92□□□□□ -0.02
VPS13D-205ENST00000473099 ZSCAN16Q9H4T2 348 aaPredicted RBP14.92□□□□□ -0.02
VPS13D-205ENST00000473099 FAM217BQ9NTX9 383 aaPredicted RBP14.92□□□□□ -0.02
VPS13D-205ENST00000473099 ZNF541Q9H0D2 1346 aa14.92□□□□□ -0.02
VPS13D-205ENST00000473099 CNTNAP1P78357 1384 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 IGKV6D-41A0A0C4DH26 115 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 CLRN2A0PK11 232 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 TCP10L2B9ZVM9 353 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 TBC1D12O60347 775 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 NMT2O60551 498 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 DEXIO95424 95 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 FMNL1O95466 1100 aaPredicted RBP14.91□□□□□ -0.02
VPS13D-205ENST00000473099 RXRAP19793 462 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 AKAP17AQ02040 695 aaKnown RBP14.91□□□□□ -0.02
VPS13D-205ENST00000473099 CERKLQ49MI3 558 aaPredicted RBP14.91□□□□□ -0.02
VPS13D-205ENST00000473099 SH3BP5LQ7L8J4 393 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 RAB11FIP4Q86YS3 637 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 ZFPM1Q8IX07 1006 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 LZTS2Q9BRK4 669 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 VEZTQ9HBM0 779 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 STX8Q9UNK0 236 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 DOCK1Q14185 1865 aa14.91□□□□□ -0.02
VPS13D-205ENST00000473099 ZC3H4Q9UPT8 1303 aaKnown RBP14.91□□□□□ -0.02
VPS13D-205ENST00000473099 TTLL1O95922 423 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 FDPSP14324 419 aaKnown RBP14.9□□□□□ -0.02
VPS13D-205ENST00000473099 C1QTNF8P60827 252 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 GRM4Q14833 912 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 CSPP1Q1MSJ5 1256 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 KIF4BQ2VIQ3 1234 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 TMEM179Q6ZVK1 233 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 CCDC144CPQ8IYA2 1237 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 CEP95Q96GE4 821 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 C8orf76Q96K31 380 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 TMEM47Q9BQJ4 181 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 MTMR4Q9NYA4 1195 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 GPRC5DQ9NZD1 345 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 RNF181Q9P0P0 153 aa14.9□□□□□ -0.02
VPS13D-205ENST00000473099 AKR1B1P15121 316 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 XBP1P17861 261 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 TRIM29Q14134 588 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 NBPF9Q3BBW0 867 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 TMTC3Q6ZXV5 915 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 APOBEC3FQ8IUX4 373 aaKnown RBP14.89□□□□□ -0.03
VPS13D-205ENST00000473099 HOOK2Q96ED9 719 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 DNAJC18Q9H819 358 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 KANSL2Q9H9L4 492 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 CABP5Q9NP86 173 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 SYNPO2Q9UMS6 1093 aa14.89□□□□□ -0.03
VPS13D-205ENST00000473099 MPHOSPH10O00566 681 aaKnown RBP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 PRPF3O43395 683 aaKnown RBP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 SMARCA1P28370 1054 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 RBM26Q5T8P6 1007 aaKnown RBP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 FOXD4L5Q5VV16 416 aaPredicted RBP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 ATL3Q6DD88 541 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 CDC37L1Q7L3B6 337 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 FBXO18Q8NFZ0 1043 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 FOXD4L4Q8WXT5 416 aaPredicted RBP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 ALG1Q9BT22 464 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 SLC26A6Q9BXS9 759 aa14.88□□□□□ -0.03
VPS13D-205ENST00000473099 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.88□□□□□ -0.03
VPS13D-205ENST00000473099 LMOD1P29536 600 aaPredicted RBP14.87□□□□□ -0.03
VPS13D-205ENST00000473099 MAP3K10Q02779 954 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 NBR1Q14596 966 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 ABCB5Q2M3G0 1257 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 SKOR2Q2VWA4 1001 aaPredicted RBP14.87□□□□□ -0.03
VPS13D-205ENST00000473099 ASPRV1Q53RT3 343 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 NBPF11Q86T75 865 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 FAM177A1Q8N128 213 aaPredicted RBP14.87□□□□□ -0.03
VPS13D-205ENST00000473099 PHKBQ93100 1093 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.87□□□□□ -0.03
VPS13D-205ENST00000473099 GINM1Q9NU53 330 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 NYAP2Q9P242 653 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 PPP2R3BQ9Y5P8 575 aa14.87□□□□□ -0.03
VPS13D-205ENST00000473099 PARP1P09874 1014 aaKnown RBP14.86□□□□□ -0.03
VPS13D-205ENST00000473099 FUT2Q10981 343 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms