RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 LINS1Q8NG48 757 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 MAFAQ8NHW3 353 aaPredicted RBP6.7□□□□□ -1.34
PTPN4-209ENST00000469511 KLHDC4Q8TBB5 520 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 SEMA6BQ9H3T3 888 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 PCDHB15Q9Y5E8 787 aa6.7□□□□□ -1.34
PTPN4-209ENST00000469511 RPAP1Q9BWH6 1393 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 LOC285556D6RIA3 1793 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 SMCHD1A6NHR9 2005 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 SOWAHBA6NEL2 793 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 DDTLA6NHG4 134 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 TRIM75PA6NK02 468 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 FAM196BA6NMK8 535 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 RNF40O75150 1001 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 CYP2B6P20813 491 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 CCND3P30281 292 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 FUT2Q10981 343 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 FKBP5Q13451 457 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 RRP1BQ14684 758 aaKnown RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 SHHQ15465 462 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 CCL14Q16627 93 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 QPCTQ16769 361 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 CCDC57Q2TAC2 916 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 TWISTNBQ3B726 338 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 KMT5BQ4FZB7 885 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 FKBP1CQ5VVH2 108 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 ANKLE1Q8NAG6 615 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 ANKK1Q8NFD2 765 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 SUCLG2Q96I99 432 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 PRR14Q9BWN1 585 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 KRTAP3-2Q9BYR7 98 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 HMX1Q9NP08 348 aaPredicted RBP6.69□□□□□ -1.34
PTPN4-209ENST00000469511 TMOD2Q9NZR1 351 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 DAGLAQ9Y4D2 1042 aa6.69□□□□□ -1.34
PTPN4-209ENST00000469511 GOLGA8CPA6NN73 597 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 ACTN4O43707 911 aaKnown RBP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 HMGCRP04035 888 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 PRDX5P30044 214 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 CACNB2Q08289 660 aaPredicted RBP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 WDR43Q15061 677 aaKnown RBP eCLIP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 RALBP1Q15311 655 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 TAF7LQ5H9L4 462 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 MAP3K21Q5TCX8 1036 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 ZNF697Q5TEC3 545 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 HHIPL2Q6UWX4 724 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 SCYL3Q8IZE3 742 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 VGLL2Q8N8G2 317 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 SMCR8Q8TEV9 937 aaPredicted RBP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 COA7Q96BR5 231 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 MRIQ9BWK5 157 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 STK31Q9BXU1 1019 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 MYH16Q9H6N6 1097 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 DDX4Q9NQI0 724 aaKnown RBP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 USP40Q9NVE5 1235 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 PCDHGC3Q9UN70 934 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 CDH23Q9H251 3354 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 LAMA2P24043 3122 aaKnown RBP6.68□□□□□ -1.34
PTPN4-209ENST00000469511 CDK5RAP2Q96SN8 1893 aa6.68□□□□□ -1.34
PTPN4-209ENST00000469511 SIPA1L1O43166 1804 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 PLXNA1Q9UIW2 1896 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 FRAT2O75474 233 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-209ENST00000469511 NBPF7P0C2Y1 421 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-209ENST00000469511 RGS3P49796 1198 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 CSPP1Q1MSJ5 1256 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 Q3C1V9 767 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 FASTKD5Q7L8L6 764 aaKnown RBP6.67□□□□□ -1.34
PTPN4-209ENST00000469511 VPS37DQ86XT2 251 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 HLA-CQ95604 372 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 TXNRD2Q9NNW7 524 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 AGTPBP1Q9UPW5 1226 aa6.67□□□□□ -1.34
PTPN4-209ENST00000469511 MYBBP1AQ9BQG0 1328 aaKnown RBP6.67□□□□□ -1.34
PTPN4-209ENST00000469511 A6NJR5 290 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 GRM8O00222 908 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 VAMP4O75379 141 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 FGFR2P21802 821 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 HMGCS2P54868 508 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 JAG1P78504 1218 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 GUCA2AQ02747 115 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 MAP3K10Q02779 954 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 SPP2Q13103 211 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 MTMR2Q13614 643 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 FAM110CQ1W6H9 321 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 SHROOM1Q2M3G4 852 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-209ENST00000469511 METTL24Q5JXM2 366 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 SH3RF1Q7Z6J0 888 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 ANKRD44Q8N8A2 993 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 TBC1D22AQ8WUA7 517 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 WNT2BQ93097 391 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 HOOK2Q96ED9 719 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 SENP6Q9GZR1 1112 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-209ENST00000469511 ASCC2Q9H1I8 757 aaPredicted RBP6.66□□□□□ -1.34
PTPN4-209ENST00000469511 FLRT1Q9NZU1 646 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 TSR3Q9UJK0 312 aaKnown RBP6.66□□□□□ -1.34
PTPN4-209ENST00000469511 SLC45A1Q9Y2W3 748 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 NDUFB9Q9Y6M9 179 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 GBF1Q92538 1859 aa6.66□□□□□ -1.34
PTPN4-209ENST00000469511 MYO5AQ9Y4I1 1855 aaKnown RBP6.65□□□□□ -1.34
PTPN4-209ENST00000469511 TMEM265A0A087WTH1 108 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 TNFRSF10AO00220 468 aa6.65□□□□□ -1.34
PTPN4-209ENST00000469511 PDE8BO95263 885 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms