RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 STAG1Q8WVM7 1258 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 BRI3BPQ8WY22 251 aa23.45■■□□□ 1.34
COL9A3-204ENST00000463487 BACE1P56817 501 aa23.44■■□□□ 1.34
COL9A3-204ENST00000463487 MTMR2Q13614 643 aa23.44■■□□□ 1.34
COL9A3-204ENST00000463487 SHROOM1Q2M3G4 852 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-204ENST00000463487 GADL1Q6ZQY3 521 aa23.44■■□□□ 1.34
COL9A3-204ENST00000463487 PROCA1Q8NCQ7 364 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-204ENST00000463487 MAP4K1Q92918 833 aa23.44■■□□□ 1.34
COL9A3-204ENST00000463487 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.44■■□□□ 1.34
COL9A3-204ENST00000463487 GTF3C3Q9Y5Q9 886 aa23.44■■□□□ 1.34
COL9A3-204ENST00000463487 RANBP6O60518 1105 aaKnown RBP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 EIF5BO60841 1220 aaKnown RBP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 REC8O95072 547 aa23.43■■□□□ 1.34
COL9A3-204ENST00000463487 HSPA1AP0DMV8 641 aaKnown RBP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 HSPA1BP0DMV9 641 aaKnown RBP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 PTH1RQ03431 593 aa23.43■■□□□ 1.34
COL9A3-204ENST00000463487 PABPC4Q13310 644 aaKnown RBP eCLIP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 RRP12Q5JTH9 1297 aaKnown RBP23.43■■□□□ 1.34
COL9A3-204ENST00000463487 ANKRD23Q86SG2 305 aa23.43■■□□□ 1.34
COL9A3-204ENST00000463487 CNNM2Q9H8M5 875 aa23.43■■□□□ 1.34
COL9A3-204ENST00000463487 FGRP09769 529 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 HMGCS2P54868 508 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 TFAP4Q01664 338 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 SH3D19Q5HYK7 790 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 USP17L2Q6R6M4 530 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 ESR2Q92731 530 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 KIAA1683Q9H0B3 1180 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 RNF186Q9NXI6 227 aa23.42■■□□□ 1.34
COL9A3-204ENST00000463487 RBM8AQ9Y5S9 174 aaKnown RBP23.42■■□□□ 1.34
COL9A3-204ENST00000463487 PLIN4Q96Q06 1357 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 IGF2BP3O00425 579 aaKnown RBP eCLIP23.41■■□□□ 1.34
COL9A3-204ENST00000463487 GUCY1A2P33402 732 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 TRDNQ13061 729 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 RNF20Q5VTR2 975 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 NEDD1Q8NHV4 660 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 KRT23Q9C075 422 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 LSG1Q9H089 658 aaKnown RBP23.41■■□□□ 1.34
COL9A3-204ENST00000463487 AGTPBP1Q9UPW5 1226 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 SLC45A1Q9Y2W3 748 aa23.41■■□□□ 1.34
COL9A3-204ENST00000463487 PTPRFP10586 1907 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 BTBD19C9JJ37 291 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 TRPA1O75762 1119 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 ATP2B2Q01814 1243 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 TBC1D10CQ8IV04 446 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 PTPN18Q99952 460 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 PNMA3Q9UL41 463 aa23.4■■□□□ 1.34
COL9A3-204ENST00000463487 TAF1CQ15572 869 aaPredicted RBP23.39■■□□□ 1.33
COL9A3-204ENST00000463487 FAM47AQ5JRC9 791 aa23.39■■□□□ 1.33
COL9A3-204ENST00000463487 ZFYVE28Q9HCC9 887 aa23.39■■□□□ 1.33
COL9A3-204ENST00000463487 GOPCQ9HD26 462 aa23.39■■□□□ 1.33
COL9A3-204ENST00000463487 PDHXO00330 501 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 TTLL1O95922 423 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 EEF2P13639 858 aaKnown RBP23.38■■□□□ 1.33
COL9A3-204ENST00000463487 CTCFP49711 727 aaPredicted RBP23.38■■□□□ 1.33
COL9A3-204ENST00000463487 ZYXQ15942 572 aaKnown RBP23.38■■□□□ 1.33
COL9A3-204ENST00000463487 CCDC178Q5BJE1 867 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 FAM43AQ8N2R8 423 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 C12orf42Q96LP6 360 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 PARK7Q99497 189 aaKnown RBP23.38■■□□□ 1.33
COL9A3-204ENST00000463487 CFHR5Q9BXR6 569 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 NYAP2Q9P242 653 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 SYNPO2Q9UMS6 1093 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 TMX2Q9Y320 296 aa23.38■■□□□ 1.33
COL9A3-204ENST00000463487 LOC285556D6RIA3 1793 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 RALYLQ86SE5 291 aaKnown RBP23.37■■□□□ 1.33
COL9A3-204ENST00000463487 IQCA1Q86XH1 822 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 ACER1Q8TDN7 264 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 LPAR1Q92633 364 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 CEP95Q96GE4 821 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 NBPF3Q9H094 633 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 MTMR4Q9NYA4 1195 aa23.37■■□□□ 1.33
COL9A3-204ENST00000463487 GREB1LQ9C091 1923 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-204ENST00000463487 IGKV6D-41A0A0C4DH26 115 aa23.36■■□□□ 1.33
COL9A3-204ENST00000463487 CYP21A2P08686 494 aa23.36■■□□□ 1.33
COL9A3-204ENST00000463487 OSBPP22059 807 aa23.36■■□□□ 1.33
COL9A3-204ENST00000463487 MOGSQ13724 837 aa23.36■■□□□ 1.33
COL9A3-204ENST00000463487 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.36■■□□□ 1.33
COL9A3-204ENST00000463487 INCENPQ9NQS7 918 aa23.36■■□□□ 1.33
COL9A3-204ENST00000463487 NEDD4P46934 1319 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 EPB41L2O43491 1005 aaKnown RBP23.35■■□□□ 1.33
COL9A3-204ENST00000463487 IRX3P78415 501 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-204ENST00000463487 GPAT2Q6NUI2 795 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 CLEC10AQ8IUN9 316 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 VCPKMTQ9H867 229 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 TCP11L1Q9NUJ3 509 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 CLIP2Q9UDT6 1046 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 STX8Q9UNK0 236 aa23.35■■□□□ 1.33
COL9A3-204ENST00000463487 FOXN1O15353 648 aa23.34■■□□□ 1.33
COL9A3-204ENST00000463487 ZKSCAN1P17029 563 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-204ENST00000463487 NCOA7Q8NI08 942 aa23.34■■□□□ 1.33
COL9A3-204ENST00000463487 SMCR8Q8TEV9 937 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-204ENST00000463487 EMILIN3Q9NT22 766 aa23.34■■□□□ 1.33
COL9A3-204ENST00000463487 A0A1W2PRG0 241 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 B4E1Z4 1266 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 RAD21O60216 631 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 KDM4AO75164 1064 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 TBC1D8O95759 1140 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 CRHR2Q13324 411 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 TREML2Q5T2D2 321 aa23.33■■□□□ 1.33
COL9A3-204ENST00000463487 CREB3L3Q68CJ9 461 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms