RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 GDF11O95390 407 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 GUCY1A2P33402 732 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 MAP3K10Q02779 954 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 ZNF444Q8N0Y2 327 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 CRACR2BQ8N4Y2 399 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 ENAHQ8N8S7 591 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 GLIS2Q9BZE0 524 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 PAPPA2Q9BXP8 1791 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 TNKSO95271 1327 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 PHIPQ8WWQ0 1821 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 PCP11498 1178 aaKnown RBP12.93□□□□□ -0.34
SCN9A-205ENST00000454569 TNNI2P48788 182 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 USP48Q86UV5 1035 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 APOBEC3FQ8IUX4 373 aaKnown RBP12.93□□□□□ -0.34
SCN9A-205ENST00000454569 NECAB1Q8N987 351 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 NEDD1Q8NHV4 660 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 TMX3Q96JJ7 454 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 IPO9Q96P70 1041 aaKnown RBP12.93□□□□□ -0.34
SCN9A-205ENST00000454569 ZSCAN10Q96SZ4 725 aaPredicted RBP12.93□□□□□ -0.34
SCN9A-205ENST00000454569 MYL10Q9BUA6 226 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 SWAP70Q9UH65 585 aa12.93□□□□□ -0.34
SCN9A-205ENST00000454569 WDR19Q8NEZ3 1342 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 PITPNM2Q9BZ72 1349 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 IGKV6D-41A0A0C4DH26 115 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 IQCA1LA6NCM1 817 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 PHF20L1A8MW92 1017 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 K7ELQ4 463 aaPredicted RBP12.92□□□□□ -0.34
SCN9A-205ENST00000454569 TSPY3P0CV98 308 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 TSPY8P0CW00 308 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 RXRAP19793 462 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 STK3Q13188 491 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 TNFAIP1Q13829 316 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 TMEM67Q5HYA8 995 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 RASGRP2Q7LDG7 609 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 SIAH1Q8IUQ4 282 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 FBXL16Q8N461 479 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 DCPSQ96C86 337 aaKnown RBP12.92□□□□□ -0.34
SCN9A-205ENST00000454569 CHMP4CQ96CF2 233 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 LIMCH1Q9UPQ0 1083 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 HPS5Q9UPZ3 1129 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 DOCK1Q14185 1865 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 MYH6P13533 1939 aa12.92□□□□□ -0.34
SCN9A-205ENST00000454569 TBC1D12O60347 775 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 VEGFAP15692 232 aaPredicted RBP12.91□□□□□ -0.34
SCN9A-205ENST00000454569 PRKG1Q13976 671 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 CERKLQ49MI3 558 aaPredicted RBP12.91□□□□□ -0.34
SCN9A-205ENST00000454569 MAP1SQ66K74 1059 aaPredicted RBP12.91□□□□□ -0.34
SCN9A-205ENST00000454569 KRT26Q7Z3Y9 468 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 CCDC84Q86UT8 332 aaPredicted RBP12.91□□□□□ -0.34
SCN9A-205ENST00000454569 FBXO22Q8NEZ5 403 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 CEP95Q96GE4 821 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 TMEM87BQ96K49 555 aa12.91□□□□□ -0.34
SCN9A-205ENST00000454569 ANGEL1Q9UNK9 670 aaKnown RBP12.91□□□□□ -0.34
SCN9A-205ENST00000454569 KLF18A0A0U1RQI7 1052 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 TRAF5O00463 557 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 PDIA3P30101 505 aaKnown RBP12.9□□□□□ -0.34
SCN9A-205ENST00000454569 INPP5BP32019 993 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 EVCP57679 992 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 FGD1P98174 961 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 WTAPQ15007 396 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 SEPT2Q15019 361 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 HSCBQ8IWL3 235 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 ZC3H15Q8WU90 426 aaKnown RBP12.9□□□□□ -0.34
SCN9A-205ENST00000454569 NCOA5Q9HCD5 579 aaKnown RBP12.9□□□□□ -0.34
SCN9A-205ENST00000454569 TCP11L1Q9NUJ3 509 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 HERC5Q9UII4 1024 aaKnown RBP12.9□□□□□ -0.34
SCN9A-205ENST00000454569 PLIN4Q96Q06 1357 aa12.9□□□□□ -0.34
SCN9A-205ENST00000454569 MPHOSPH10O00566 681 aaKnown RBP12.9□□□□□ -0.35
SCN9A-205ENST00000454569 PPFIA3O75145 1194 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 GH2P01242 217 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 LIFRP42702 1097 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 NOVP48745 357 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 CCT2P78371 535 aaKnown RBP12.9□□□□□ -0.35
SCN9A-205ENST00000454569 MOB2Q70IA6 237 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 PNMA8AQ86V59 439 aaPredicted RBP12.9□□□□□ -0.35
SCN9A-205ENST00000454569 SGMS1Q86VZ5 419 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 CCDC83Q8IWF9 413 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 CCDC144CPQ8IYA2 1237 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 UBAC1Q9BSL1 405 aa12.9□□□□□ -0.35
SCN9A-205ENST00000454569 USP2O75604 605 aaPredicted RBP12.89□□□□□ -0.35
SCN9A-205ENST00000454569 PPP1R37O75864 691 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 CDC27P30260 824 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 CAP2P40123 477 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 SCRN1Q12765 414 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 CUL4AQ13619 759 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 ABCB5Q2M3G0 1257 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 APOA5Q6Q788 366 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 IQCA1Q86XH1 822 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 SULF1Q8IWU6 871 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 EFCAB3Q8N7B9 438 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 ANKS1AQ92625 1134 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 CDCA5Q96FF9 252 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 TMEM47Q9BQJ4 181 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 TRIM34Q9BYJ4 488 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 ZNF287Q9HBT7 754 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 FAM217BQ9NTX9 383 aaPredicted RBP12.89□□□□□ -0.35
SCN9A-205ENST00000454569 MTMR4Q9NYA4 1195 aa12.89□□□□□ -0.35
SCN9A-205ENST00000454569 NAP1L2Q9ULW6 460 aaPredicted RBP12.89□□□□□ -0.35
SCN9A-205ENST00000454569 TRPM7Q96QT4 1865 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms