RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
SMPD4-213ENST00000454468 MRFAP1L1Q96HT8 127 aa13.64□□□□□ -0.23
SMPD4-213ENST00000454468 U2AF2P26368 475 aaKnown RBP eCLIP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 UBA7P41226 1012 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 EARS2Q5JPH6 523 aaKnown RBP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 CLEC4GQ6UXB4 293 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 DESI2Q9BSY9 194 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 THRAP3Q9Y2W1 955 aaKnown RBP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 NAPAP54920 295 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 ALX1Q15699 326 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 ZNF804AQ7Z570 1209 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 STAG2Q8N3U4 1231 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 ZNF512BQ96KM6 892 aaPredicted RBP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 ZHX3Q9H4I2 956 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 NARFQ9UHQ1 456 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 PHRF1Q9P1Y6 1649 aaKnown RBP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 STRCP1A6NGW2 1772 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 RPS6KA4O75676 772 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 TOB1P50616 345 aaPredicted RBP13.63□□□□□ -0.23
SMPD4-213ENST00000454468 INF2Q27J81 1249 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 VPS16Q9H269 839 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 GPCPD1Q9NPB8 672 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 DACH1Q9UI36 760 aa13.63□□□□□ -0.23
SMPD4-213ENST00000454468 CCDC96Q2M329 555 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 FILIP1LQ4L180 1135 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 JAKMIP3Q5VZ66 844 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 TRIM34Q9BYJ4 488 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 TPM1P09493 284 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 EVCP57679 992 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 AMIGO3Q86WK7 504 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 LZTFL1Q9NQ48 299 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 CTNND2Q9UQB3 1225 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 FRMPD2Q68DX3 1309 aaPredicted RBP13.62□□□□□ -0.23
SMPD4-213ENST00000454468 PPP6R2O75170 966 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 STAT6P42226 847 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 GNG11P61952 73 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 ST5P78524 1137 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 TCP10Q12799 353 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 SRBD1Q8N5C6 995 aaKnown RBP13.62□□□□□ -0.23
SMPD4-213ENST00000454468 SEC63Q9UGP8 760 aaKnown RBP13.62□□□□□ -0.23
SMPD4-213ENST00000454468 MAN1B1Q9UKM7 699 aa13.62□□□□□ -0.23
SMPD4-213ENST00000454468 N4BP3O15049 544 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 BTDP43251 543 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 RBM6P78332 1123 aaKnown RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 GRIK5Q16478 980 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 RESP18Q5W5W9 173 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 USP17L2Q6R6M4 530 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 RBM43Q6ZSC3 357 aaKnown RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 CLEC10AQ8IUN9 316 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 FOXP4Q8IVH2 680 aaPredicted RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 ANKRD20A12PQ8NF67 263 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 SCG2P13521 617 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 PTPAQ15257 358 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 RIOK1Q9BRS2 568 aaKnown RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 NEMFO60524 1076 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 LDHCP07864 332 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 IDEP14735 1019 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 LRRC47Q8N1G4 583 aaKnown RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 FOXP1Q9H334 677 aaPredicted RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 GGA1Q9UJY5 639 aa13.61□□□□□ -0.23
SMPD4-213ENST00000454468 ZNF215Q9UL58 517 aaPredicted RBP13.61□□□□□ -0.23
SMPD4-213ENST00000454468 PP2D1A8MPX8 630 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CALM1P0DP23 149 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CALM2P0DP24 149 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CALM3P0DP25 149 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 NBPF11Q86T75 865 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CCDC150Q8NCX0 1101 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 RNF26Q9BY78 433 aaPredicted RBP13.6□□□□□ -0.23
SMPD4-213ENST00000454468 PNPLA7Q6ZV29 1317 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 SF3B3Q15393 1217 aaKnown RBP13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CCDC178Q5BJE1 867 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 RBM28Q9NW13 759 aaKnown RBP13.6□□□□□ -0.23
SMPD4-213ENST00000454468 WDR66Q8TBY9 1149 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 CDK5RAP3Q96JB5 506 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 NUP88Q99567 741 aaPredicted RBP13.6□□□□□ -0.23
SMPD4-213ENST00000454468 MXD3Q9BW11 206 aa13.6□□□□□ -0.23
SMPD4-213ENST00000454468 ZC3H12CQ9C0D7 883 aaKnown RBP13.6□□□□□ -0.23
SMPD4-213ENST00000454468 SERPINB2P05120 415 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 PTPREP23469 700 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 PLCD1P51178 756 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 TRMT1LQ7Z2T5 733 aaKnown RBP13.59□□□□□ -0.23
SMPD4-213ENST00000454468 MAP7D2Q96T17 732 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 CACNB3P54284 484 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 FMR1Q06787 632 aaKnown RBP eCLIP13.59□□□□□ -0.23
SMPD4-213ENST00000454468 TSR1Q2NL82 804 aaKnown RBP13.59□□□□□ -0.23
SMPD4-213ENST00000454468 ARMCX5Q6P1M9 558 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 SEPT12Q8IYM1 358 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 EYA3Q99504 573 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 MAP3K14Q99558 947 aa13.59□□□□□ -0.23
SMPD4-213ENST00000454468 BIN2Q9UBW5 565 aaPredicted RBP13.59□□□□□ -0.23
SMPD4-213ENST00000454468 WNT7AO00755 349 aa13.58□□□□□ -0.23
SMPD4-213ENST00000454468 ELF2Q15723 593 aa13.58□□□□□ -0.23
SMPD4-213ENST00000454468 PRDM4Q9UKN5 801 aa13.58□□□□□ -0.23
SMPD4-213ENST00000454468 COL18A1P39060 1754 aa13.58□□□□□ -0.24
SMPD4-213ENST00000454468 FAM196BA6NMK8 535 aa13.58□□□□□ -0.24
SMPD4-213ENST00000454468 KLRF2D3W0D1 207 aa13.58□□□□□ -0.24
SMPD4-213ENST00000454468 CCNT1O60563 726 aaKnown RBP13.58□□□□□ -0.24
SMPD4-213ENST00000454468 TMTC3Q6ZXV5 915 aa13.58□□□□□ -0.24
SMPD4-213ENST00000454468 IQUBQ8NA54 791 aa13.58□□□□□ -0.24
SMPD4-213ENST00000454468 SPTLC3Q9NUV7 552 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms