RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 MTMR2Q13614 643 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 SEPT2Q15019 361 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 GADL1Q6ZQY3 521 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 TMEM179Q6ZVK1 233 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 WDR18Q9BV38 432 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 DSCC1Q9BVC3 393 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 SAGE1Q9NXZ1 904 aa14.85□□□□□ -0.03
SKA1-203ENST00000417656 CDC45O75419 566 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 SLC3A2P08195 630 aaKnown RBP14.84□□□□□ -0.03
SKA1-203ENST00000417656 HMGCS2P54868 508 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 TBC1D10CQ8IV04 446 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 CCDC17Q96LX7 622 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 FEZ1Q99689 392 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 NBPF3Q9H094 633 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 MKNK2Q9HBH9 465 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 ANAPC4Q9UJX5 808 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.84□□□□□ -0.03
SKA1-203ENST00000417656 TACC3Q9Y6A5 838 aa14.84□□□□□ -0.03
SKA1-203ENST00000417656 ALDH1A1P00352 501 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 CTCFP49711 727 aaPredicted RBP14.83□□□□□ -0.04
SKA1-203ENST00000417656 PTH1RQ03431 593 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 ICA1Q05084 483 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 PDE4BQ07343 736 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 ZYXQ15942 572 aaKnown RBP14.83□□□□□ -0.04
SKA1-203ENST00000417656 OTUD7BQ6GQQ9 843 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 ACER1Q8TDN7 264 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 ESYT1Q9BSJ8 1104 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 ZNF287Q9HBT7 754 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 INCENPQ9NQS7 918 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 PLIN4Q96Q06 1357 aa14.83□□□□□ -0.04
SKA1-203ENST00000417656 MYH4Q9Y623 1939 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 TBC1D8O95759 1140 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 BACE1P56817 501 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 CRHR2Q13324 411 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 TAF1CQ15572 869 aaPredicted RBP14.82□□□□□ -0.04
SKA1-203ENST00000417656 TREML2Q5T2D2 321 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 GPAT2Q6NUI2 795 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 FASTKD5Q7L8L6 764 aaKnown RBP14.82□□□□□ -0.04
SKA1-203ENST00000417656 ANKRD23Q86SG2 305 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.82□□□□□ -0.04
SKA1-203ENST00000417656 R3HDMLQ9H3Y0 253 aa14.82□□□□□ -0.04
SKA1-203ENST00000417656 USP17L10C9JJH3 530 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 PDHXO00330 501 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 LBX1P52954 281 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 SH3D19Q5HYK7 790 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 FAM47AQ5JRC9 791 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 ZNF444Q8N0Y2 327 aaPredicted RBP14.81□□□□□ -0.04
SKA1-203ENST00000417656 PROCA1Q8NCQ7 364 aaPredicted RBP14.81□□□□□ -0.04
SKA1-203ENST00000417656 ZCCHC17Q9NP64 241 aaKnown RBP14.81□□□□□ -0.04
SKA1-203ENST00000417656 TOMM22Q9NS69 142 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 TMOD4Q9NZQ9 345 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 AGTPBP1Q9UPW5 1226 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 NEDD4P46934 1319 aa14.81□□□□□ -0.04
SKA1-203ENST00000417656 A0A1W2PRG0 241 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 ZNF213O14771 459 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 TSPY3P0CV98 308 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 TSPY8P0CW00 308 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 ATP2B2Q01814 1243 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 IMMTQ16891 758 aaKnown RBP14.8□□□□□ -0.04
SKA1-203ENST00000417656 RRP12Q5JTH9 1297 aaKnown RBP14.8□□□□□ -0.04
SKA1-203ENST00000417656 USP17L2Q6R6M4 530 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 CASC1Q6TDU7 716 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 STAG1Q8WVM7 1258 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 CFHR5Q9BXR6 569 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 KIAA1683Q9H0B3 1180 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 CTNNA3Q9UI47 895 aa14.8□□□□□ -0.04
SKA1-203ENST00000417656 IGKV6D-41A0A0C4DH26 115 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 C19orf81C9J6K1 198 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 ORC4O43929 436 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 EEF2P13639 858 aaKnown RBP14.79□□□□□ -0.04
SKA1-203ENST00000417656 TFAP4Q01664 338 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 AKNAD1Q5T1N1 836 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 SIAH1Q8IUQ4 282 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 PARK7Q99497 189 aaKnown RBP14.79□□□□□ -0.04
SKA1-203ENST00000417656 LSG1Q9H089 658 aaKnown RBP14.79□□□□□ -0.04
SKA1-203ENST00000417656 KANSL2Q9H9L4 492 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 ARHGEF10LQ9HCE6 1279 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 EMILIN3Q9NT22 766 aa14.79□□□□□ -0.04
SKA1-203ENST00000417656 CASP8AP2Q9UKL3 1982 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 ZSWIM8A7E2V4 1837 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 ADGRA2Q96PE1 1338 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 TSPY2A6NKD2 308 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 RANBP6O60518 1105 aaKnown RBP14.78□□□□□ -0.04
SKA1-203ENST00000417656 FGRP09769 529 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 CYP2C8P10632 490 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 USP14P54578 494 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 MFSD6Q6ZSS7 791 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 KIAA1211Q6ZU35 1233 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 NEDD1Q8NHV4 660 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 NKX2-3Q8TAU0 364 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 CEP95Q96GE4 821 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 C12orf42Q96LP6 360 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 RNF41Q9H4P4 317 aaPredicted RBP14.78□□□□□ -0.04
SKA1-203ENST00000417656 ZFYVE28Q9HCC9 887 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 ANO2Q9NQ90 1003 aa14.78□□□□□ -0.04
SKA1-203ENST00000417656 RBM8AQ9Y5S9 174 aaKnown RBP14.78□□□□□ -0.04
SKA1-203ENST00000417656 GPR25O00155 361 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 NMT2O60551 498 aa14.77□□□□□ -0.05
SKA1-203ENST00000417656 PCP11498 1178 aaKnown RBP14.77□□□□□ -0.05
SKA1-203ENST00000417656 VCAM1P19320 739 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms