RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 RSRC2Q7L4I2 434 aaKnown RBP11.15□□□□□ -0.62
CD44-206ENST00000415148 ZNF654Q8IZM8 581 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 FERMT2Q96AC1 680 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 BCL9O00512 1426 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 AKR1B15C9JRZ8 316 aaPredicted RBP11.14□□□□□ -0.63
CD44-206ENST00000415148 ABL1P00519 1130 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 SH3RF1Q7Z6J0 888 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 DZIP3Q86Y13 1208 aaKnown RBP11.14□□□□□ -0.63
CD44-206ENST00000415148 CMTR1Q8N1G2 835 aaKnown RBP11.14□□□□□ -0.63
CD44-206ENST00000415148 GSDMAQ96QA5 445 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 CSRNP2Q9H175 543 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 SOWAHDA6NJG2 315 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 TRIM75PA6NK02 468 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 TEX33O43247 280 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 CCDC175P0C221 793 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 CASP1P29466 404 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 AKAP17AQ02040 695 aaKnown RBP11.14□□□□□ -0.63
CD44-206ENST00000415148 SMC1AQ14683 1233 aaKnown RBP11.14□□□□□ -0.63
CD44-206ENST00000415148 SEC23AQ15436 765 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 LCORLQ8N3X6 602 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 RABGGTAQ92696 567 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 UBAC1Q9BSL1 405 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 FUT8Q9BYC5 575 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 CABP5Q9NP86 173 aa11.14□□□□□ -0.63
CD44-206ENST00000415148 PRPF3O43395 683 aaKnown RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 COBLO75128 1261 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 PCP11498 1178 aaKnown RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 PPARAQ07869 468 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 RAD51AP2Q09MP3 1159 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 NR5A1Q13285 461 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 RRP12Q5JTH9 1297 aaKnown RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 HELBQ8NG08 1087 aaPredicted RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 ESR2Q92731 530 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 CCDC51Q96ER9 411 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 ZFP91Q96JP5 570 aaPredicted RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 PYM1Q9BRP8 204 aaKnown RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 PHF20Q9BVI0 1012 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 SUGCTQ9HAC7 445 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 RBM28Q9NW13 759 aaKnown RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 CALCOCO1Q9P1Z2 691 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 LCMT1Q9UIC8 334 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 PLCH1Q4KWH8 1693 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 PRKAB2O43741 272 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 CALM1P0DP23 149 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 CALM2P0DP24 149 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 CALM3P0DP25 149 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 KRT2P35908 639 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 PBX1P40424 430 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 PPFIBP1Q86W92 1011 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 SLC4A9Q96Q91 983 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 TOMM22Q9NS69 142 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 ZBTB1Q9Y2K1 713 aa11.13□□□□□ -0.63
CD44-206ENST00000415148 COL22A1Q8NFW1 1626 aaPredicted RBP11.13□□□□□ -0.63
CD44-206ENST00000415148 CUL4BQ13620 913 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 FILIP1LQ4L180 1135 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 CDKAL1Q5VV42 579 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 RAD9BQ6WBX8 426 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 APTXQ7Z2E3 356 aaKnown RBP11.12□□□□□ -0.63
CD44-206ENST00000415148 CCDC82Q8N4S0 544 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 PAGE5Q96GU1 130 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 ZKSCAN3Q9BRR0 538 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 LZTFL1Q9NQ48 299 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 SLAIN2Q9P270 581 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 ADD3Q9UEY8 706 aaKnown RBP11.12□□□□□ -0.63
CD44-206ENST00000415148 PUF60Q9UHX1 559 aaKnown RBP11.12□□□□□ -0.63
CD44-206ENST00000415148 ITIH6Q6UXX5 1313 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 NHSL1Q5SYE7 1610 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 FECHP22830 423 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 CCDC152Q4G0S7 254 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 WWC2Q6AWC2 1192 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 TMED8Q6PL24 325 aaPredicted RBP11.12□□□□□ -0.63
CD44-206ENST00000415148 OXER1Q8TDS5 423 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 CPLX3Q8WVH0 158 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 GOLGA1Q92805 767 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 PNKPQ96T60 521 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 LRP2BPQ9P2M1 347 aa11.12□□□□□ -0.63
CD44-206ENST00000415148 FAM205CA6NFA0 338 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 N4BP1O75113 896 aaKnown RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 ATP2B1P20020 1258 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 IGHMBP2P38935 993 aaKnown RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 DPYDQ12882 1025 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 PKN1Q16512 942 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 PARP10Q53GL7 1025 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 NUP133Q8WUM0 1156 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 SHISA4Q96DD7 197 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 ARFGAP3Q9NP61 516 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 ADGRG1Q9Y653 693 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 A0A087X0B3 334 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 LRRC10BA6NIK2 292 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 POTEB2H3BUK9 544 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 FGRP09769 529 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 CD44P16070 742 aaKnown RBP11.11□□□□□ -0.63
CD44-206ENST00000415148 TXLNAP40222 546 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 STX17P56962 302 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 FUT2Q10981 343 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 BRD3Q15059 726 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 LONRF2Q1L5Z9 754 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 SUSD4Q5VX71 490 aa11.11□□□□□ -0.63
CD44-206ENST00000415148 RASGRP2Q7LDG7 609 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms