RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 USP11P51784 963 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 DDR2Q16832 855 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 UNC5AQ6ZN44 842 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 LRP10Q7Z4F1 713 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.25□□□□□ -1.41
BRCA1-204ENST00000412061 CELF2-AS1Q8N7Q2 184 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 ZCRB1Q8TBF4 217 aaKnown RBP6.25□□□□□ -1.41
BRCA1-204ENST00000412061 WFDC12Q8WWY7 111 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 SRPK1Q96SB4 655 aaKnown RBP6.25□□□□□ -1.41
BRCA1-204ENST00000412061 YIPF2Q9BWQ6 316 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 KRTAP9-2Q9BYQ4 174 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 PCOLCE2Q9UKZ9 415 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 SUGT1Q9Y2Z0 365 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 RAB6AP20340 208 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 ITGB7P26010 798 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 NOS3P29474 1203 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 CCNFP41002 786 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 IREB2P48200 963 aaKnown RBP6.25□□□□□ -1.41
BRCA1-204ENST00000412061 ADGRE1Q14246 886 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 SLBPQ14493 270 aaKnown RBP eCLIP6.25□□□□□ -1.41
BRCA1-204ENST00000412061 NKG7Q16617 165 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 UVSSAQ2YD98 709 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 PHACTR4Q8IZ21 702 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 DEPDC7Q96QD5 511 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 SLC9A7Q96T83 725 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 CCDC113Q9H0I3 377 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 ACSS3Q9H6R3 686 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 ST7Q9NRC1 585 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 SNTG2Q9NY99 539 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 MAPK8IP1Q9UQF2 711 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 MSRB2Q9Y3D2 182 aa6.25□□□□□ -1.41
BRCA1-204ENST00000412061 C1QTNF9BB2RNN3 333 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 DDAH1O94760 285 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 CST3P01034 146 aaPredicted RBP6.24□□□□□ -1.41
BRCA1-204ENST00000412061 RASA3Q14644 834 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 MBTPS1Q14703 1052 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 PRAMEF13Q5VWM6 474 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.24□□□□□ -1.41
BRCA1-204ENST00000412061 UBE3DQ7Z6J8 389 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 FAM46AQ96IP4 442 aaKnown RBP6.24□□□□□ -1.41
BRCA1-204ENST00000412061 CCDC74BQ96LY2 380 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 PSMG3-AS1Q96PY0 264 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 DPH2Q9BQC3 489 aaPredicted RBP6.24□□□□□ -1.41
BRCA1-204ENST00000412061 FOXQ1Q9C009 403 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 BRINP2Q9C0B6 783 aa6.24□□□□□ -1.41
BRCA1-204ENST00000412061 PHAXQ9H814 394 aaKnown RBP6.24□□□□□ -1.41
BRCA1-204ENST00000412061 PLEKHD1A6NEE1 506 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 FAM86C2PA6NEL3 165 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 CCDC85CA6NKD9 419 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 RGS13O14921 159 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 LRIG2O94898 1065 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 PARNO95453 639 aaKnown RBP6.23□□□□□ -1.41
BRCA1-204ENST00000412061 GBP1P32455 592 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 CHRNA4P43681 627 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 ZYXQ15942 572 aaKnown RBP6.23□□□□□ -1.41
BRCA1-204ENST00000412061 CDPF1Q6NVV7 123 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 FILIP1Q7Z7B0 1213 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 CD163Q86VB7 1156 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 TXNRD3Q86VQ6 643 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 MFSD2AQ8NA29 543 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 ZNF526Q8TF50 670 aaPredicted RBP6.23□□□□□ -1.41
BRCA1-204ENST00000412061 CYB5D2Q8WUJ1 264 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 DHRS1Q96LJ7 313 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 UBL7Q96S82 380 aaPredicted RBP6.23□□□□□ -1.41
BRCA1-204ENST00000412061 PSMD1Q99460 953 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 KIF2CQ99661 725 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 IFT57Q9NWB7 429 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 SLC52A1Q9NWF4 448 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 DAGLAQ9Y4D2 1042 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 RIPOR2Q9Y4F9 1068 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 COL4A3BPQ9Y5P4 624 aa6.23□□□□□ -1.41
BRCA1-204ENST00000412061 LOC102724159A0A0B4J2E5 919 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 KRTAP9-6A0A140TA67 174 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 PDPK1O15530 556 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 GJB6O95452 261 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 POLR2BP30876 1174 aaKnown RBP6.22□□□□□ -1.41
BRCA1-204ENST00000412061 IFRD2Q12894 506 aaPredicted RBP6.22□□□□□ -1.41
BRCA1-204ENST00000412061 RASGRF1Q13972 1273 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 MAP7Q14244 749 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 NCAPHQ15003 741 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 PWP2Q15269 919 aaKnown RBP6.22□□□□□ -1.41
BRCA1-204ENST00000412061 CCDC181Q5TID7 509 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 VHLLQ6RSH7 139 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 C6orf15Q6UXA7 325 aaPredicted RBP6.22□□□□□ -1.41
BRCA1-204ENST00000412061 ARMCX6Q7L4S7 300 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 FAM178BQ8IXR5 827 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 FBLIM1Q8WUP2 373 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 UTP4Q969X6 686 aaKnown RBP6.22□□□□□ -1.41
BRCA1-204ENST00000412061 SEMA6CQ9H3T2 930 aa6.22□□□□□ -1.41
BRCA1-204ENST00000412061 LTBP3Q9NS15 1303 aa6.21□□□□□ -1.41
BRCA1-204ENST00000412061 FAM221BA6H8Z2 402 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 NFICP08651 508 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 BMP3P12645 472 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 RXRBP28702 533 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 CHMP4BP1P59074 171 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 BBS9Q3SYG4 887 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 SGO2Q562F6 1265 aa6.21□□□□□ -1.42
BRCA1-204ENST00000412061 DZIP1LQ8IYY4 767 aaKnown RBP6.21□□□□□ -1.42
BRCA1-204ENST00000412061 BAHD1Q8TBE0 780 aaPredicted RBP6.21□□□□□ -1.42
BRCA1-204ENST00000412061 XAGE3Q8WTP9 111 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms