RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PPP6R2O75170 966 aa15.27■□□□□ 0.03
VPS54-203ENST00000409558 TSPY3P0CV98 308 aa15.27■□□□□ 0.03
VPS54-203ENST00000409558 TSPY8P0CW00 308 aa15.27■□□□□ 0.03
VPS54-203ENST00000409558 RBM6P78332 1123 aaKnown RBP15.27■□□□□ 0.03
VPS54-203ENST00000409558 CTNND2Q9UQB3 1225 aa15.27■□□□□ 0.03
VPS54-203ENST00000409558 TTC38Q5R3I4 469 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 ZNF512BQ96KM6 892 aaPredicted RBP15.26■□□□□ 0.03
VPS54-203ENST00000409558 GSDMDP57764 484 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 GNG11P61952 73 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 RRAGBQ5VZM2 374 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 UBA5Q9GZZ9 404 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 A0A0U1RQJ8 604 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 FAM170AA1A519 330 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 TMTC2Q8N394 836 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 ATRIPQ8WXE1 791 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 PTPREP23469 700 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 UBE4AQ14139 1066 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 ALX1Q15699 326 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 PKN1Q16512 942 aa15.26■□□□□ 0.03
VPS54-203ENST00000409558 ZNF444Q8N0Y2 327 aaPredicted RBP15.26■□□□□ 0.03
VPS54-203ENST00000409558 PKD1L3Q7Z443 1732 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 LDHBP07195 334 aaKnown RBP15.25■□□□□ 0.03
VPS54-203ENST00000409558 INF2Q27J81 1249 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 SMARCC1Q92922 1105 aaPredicted RBP15.25■□□□□ 0.03
VPS54-203ENST00000409558 AK7Q96M32 723 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 CCDC94Q9BW85 323 aaPredicted RBP15.25■□□□□ 0.03
VPS54-203ENST00000409558 HSD3B7Q9H2F3 369 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 RNF216Q9NWF9 866 aaPredicted RBP15.25■□□□□ 0.03
VPS54-203ENST00000409558 HPSEQ9Y251 543 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 SLIT2O94813 1529 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 PLCD1P51178 756 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 MNS1Q8NEH6 495 aa15.25■□□□□ 0.03
VPS54-203ENST00000409558 UFL1O94874 794 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 SEC23AQ15436 765 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 MAP7D2Q96T17 732 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 NOL10Q9BSC4 688 aaKnown RBP15.24■□□□□ 0.03
VPS54-203ENST00000409558 MXD3Q9BW11 206 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 NWD2Q9ULI1 1742 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 TOGARAM1Q9Y4F4 1720 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 TFRCP02786 760 aaKnown RBP15.24■□□□□ 0.03
VPS54-203ENST00000409558 CD44P16070 742 aaKnown RBP15.24■□□□□ 0.03
VPS54-203ENST00000409558 PNMA1Q8ND90 353 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 ST7Q9NRC1 585 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 TROAPQ12815 778 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 USP17L2Q6R6M4 530 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 TOGARAM2Q6ZUX3 1019 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 TAB2Q9NYJ8 693 aa15.24■□□□□ 0.03
VPS54-203ENST00000409558 FBXL16Q8N461 479 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 RPGRQ92834 1020 aaKnown RBP15.23■□□□□ 0.03
VPS54-203ENST00000409558 FOXP1Q9H334 677 aaPredicted RBP15.23■□□□□ 0.03
VPS54-203ENST00000409558 CEP131Q9UPN4 1083 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 FRMPD2Q68DX3 1309 aaPredicted RBP15.23■□□□□ 0.03
VPS54-203ENST00000409558 CCDC194A0A1B0GVG4 234 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 SOWAHDA6NJG2 315 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 CDC25BP30305 580 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 LETM2Q2VYF4 491 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 CARD6Q9BX69 1037 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 INTS13Q9NVM9 706 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 USP21Q9UK80 565 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 GDAQ9Y2T3 454 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 PAXBP1Q9Y5B6 917 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 PARP4Q9UKK3 1724 aaKnown RBP15.23■□□□□ 0.03
VPS54-203ENST00000409558 CUL4BQ13620 913 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 TEX35Q5T0J7 233 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 CCDC150Q8NCX0 1101 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 PCMTD1Q96MG8 357 aaPredicted RBP15.23■□□□□ 0.03
VPS54-203ENST00000409558 HINFPQ9BQA5 517 aa15.23■□□□□ 0.03
VPS54-203ENST00000409558 SPATA31A5Q5VU36 1347 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 PNPLA7Q6ZV29 1317 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 SPATA31A7Q8IWB4 1347 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 CNBD1Q8NA66 436 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 BAG1Q99933 345 aaPredicted RBP15.22■□□□□ 0.03
VPS54-203ENST00000409558 TRIM49BA6NDI0 452 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 CBFA2T2O43439 604 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 JAKMIP3Q5VZ66 844 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 COL1A1P02452 1464 aaPredicted RBP15.22■□□□□ 0.03
VPS54-203ENST00000409558 GJA10Q969M2 543 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 TUBE1Q9UJT0 475 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 RTL9Q8NET4 1388 aa15.22■□□□□ 0.03
VPS54-203ENST00000409558 G3V3G9 751 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 NEMFO60524 1076 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 SCNN1DP51172 638 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 TRAPPC3LQ5T215 181 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 DCAF8Q5TAQ9 597 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 HPS3Q969F9 1004 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 PAGE5Q96GU1 130 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 SRPRBQ9Y5M8 271 aaKnown RBP15.21■□□□□ 0.03
VPS54-203ENST00000409558 COL4A1P02462 1669 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 N4BP3O15049 544 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 SCG2P13521 617 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 PPFIBP1Q86W92 1011 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 RNF26Q9BY78 433 aaPredicted RBP15.21■□□□□ 0.03
VPS54-203ENST00000409558 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.21■□□□□ 0.03
VPS54-203ENST00000409558 MPHOSPH10O00566 681 aaKnown RBP15.21■□□□□ 0.03
VPS54-203ENST00000409558 ARHGAP29Q52LW3 1261 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 TMTC3Q6ZXV5 915 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 MED15Q96RN5 788 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 TFR2Q9UP52 801 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 WDR19Q8NEZ3 1342 aa15.21■□□□□ 0.03
VPS54-203ENST00000409558 FAM196BA6NMK8 535 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms