RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PFKFB2O60825 505 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 SLC9C2Q5TAH2 1124 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 CCDC34Q96HJ3 373 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 MXD3Q9BW11 206 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 PARD6BQ9BYG5 372 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 KIAA1468Q9P260 1216 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 CHD4Q14839 1912 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 MAST3O60307 1309 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 TCRBV5S4A2TA0A5A2 114 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 ZSCAN12O43309 604 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 CEBPZQ03701 1054 aaKnown RBP12.72□□□□□ -0.37
CUX1-204ENST00000393824 NCAPHQ15003 741 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 FSIP1Q8NA03 581 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 USP28Q96RU2 1077 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 DBNDD1Q9H9R9 158 aa12.72□□□□□ -0.37
CUX1-204ENST00000393824 RNF113AO15541 343 aaKnown RBP12.71□□□□□ -0.37
CUX1-204ENST00000393824 PDE6AP16499 860 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 BRD3Q15059 726 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 DPCR1Q3MIW9 517 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 ZMYM1Q5SVZ6 1142 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 LEKR1Q6ZMV7 388 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 C15orf52Q6ZUT6 534 aaKnown RBP12.71□□□□□ -0.37
CUX1-204ENST00000393824 TMC4Q7Z404 712 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 EPC1Q9H2F5 836 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 JRKLQ9Y4A0 524 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 MRFAP1Q9Y605 127 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 DLEC1Q9Y238 1755 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 COL4A5P29400 1685 aa12.71□□□□□ -0.37
CUX1-204ENST00000393824 ZNF532Q9HCE3 1301 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 A0A1W2PQ27 194 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 A0A1W2PQ64 194 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 A0A1W2PQD8 194 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 H3BQF6 201 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 ADD2P35612 726 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 AOC3Q16853 763 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 LONRF2Q1L5Z9 754 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 ADALQ6DHV7 355 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 MAGEB6Q8N7X4 407 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 HNRNPLLQ8WVV9 542 aaKnown RBP12.71□□□□□ -0.38
CUX1-204ENST00000393824 MYCBPQ99417 103 aaPredicted RBP12.71□□□□□ -0.38
CUX1-204ENST00000393824 SDF4Q9BRK5 362 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 MYH15Q9Y2K3 1946 aa12.71□□□□□ -0.38
CUX1-204ENST00000393824 VWA3AA6NCI4 1184 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 GOLGA6L9A6NEM1 432 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 IKBKBO14920 756 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 TGFB2P61812 414 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 Q6ZUG5 572 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 MRPS27Q92552 414 aaKnown RBP12.7□□□□□ -0.38
CUX1-204ENST00000393824 NCAPGQ9BPX3 1015 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 FHDC1Q9C0D6 1143 aaPredicted RBP12.7□□□□□ -0.38
CUX1-204ENST00000393824 IL1R1P14778 569 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 FANCCQ00597 558 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 PPP2R3AQ06190 1150 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 TTC31Q49AM3 519 aaPredicted RBP12.7□□□□□ -0.38
CUX1-204ENST00000393824 MIGA1Q8NAN2 632 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 FTOQ9C0B1 505 aaKnown RBP eCLIP12.7□□□□□ -0.38
CUX1-204ENST00000393824 SPON1Q9HCB6 807 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 GNL3LQ9NVN8 582 aaKnown RBP12.7□□□□□ -0.38
CUX1-204ENST00000393824 PIM2Q9P1W9 311 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 DENND2AQ9ULE3 1009 aa12.7□□□□□ -0.38
CUX1-204ENST00000393824 TXLNAP40222 546 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 ME1P48163 572 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 ZRSR1Q15695 479 aaKnown RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 ZNF804AQ7Z570 1209 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 CERS5Q8N5B7 392 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 ERCC4Q92889 916 aaPredicted RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 RTFDC1Q9BY42 306 aaPredicted RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 AGXT2Q9BYV1 514 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 ZC3H12CQ9C0D7 883 aaKnown RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 ZNF277Q9NRM2 450 aaPredicted RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 LRP2BPQ9P2M1 347 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 MKRN1Q9UHC7 482 aaKnown RBP12.69□□□□□ -0.38
CUX1-204ENST00000393824 CD2APQ9Y5K6 639 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 NEDD4P46934 1319 aa12.69□□□□□ -0.38
CUX1-204ENST00000393824 ARHGAP6O43182 974 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 PRR29P0C7W0 189 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 PRELPP51888 382 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 NLRP12P59046 1061 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 APOBRQ0VD83 1088 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 MCMDC2Q4G0Z9 681 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 PACS2Q86VP3 889 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 NSUN7Q8NE18 718 aaKnown RBP12.68□□□□□ -0.38
CUX1-204ENST00000393824 GOLGA1Q92805 767 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 PCDHA7Q9UN72 937 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 BCS1LQ9Y276 419 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 BRCA1P38398 1863 aaKnown RBP12.68□□□□□ -0.38
CUX1-204ENST00000393824 GTF2IP78347 998 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 MECOMQ03112 1051 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 SCRN1Q12765 414 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 DIXDC1Q155Q3 683 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 DHX32Q7L7V1 743 aaKnown RBP12.68□□□□□ -0.38
CUX1-204ENST00000393824 RAI14Q9P0K7 980 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 PPP2R2CQ9Y2T4 447 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 SCN9AQ15858 1988 aa12.68□□□□□ -0.38
CUX1-204ENST00000393824 YDJCA8MPS7 323 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 EIF3CLB5ME19 914 aaKnown RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 CBFA2T2O43439 604 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 USP5P45974 858 aa12.67□□□□□ -0.38
CUX1-204ENST00000393824 GNL2Q13823 731 aaKnown RBP12.67□□□□□ -0.38
CUX1-204ENST00000393824 TTF1Q15361 905 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms