RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 IFNAR1P17181 557 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 PLCD1P51178 756 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 PRKG1Q13976 671 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 TXLNBQ8N3L3 684 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 MASTLQ96GX5 879 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 MAPK8IP1Q9UQF2 711 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 CLIC4Q9Y696 253 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 TRIM21P19474 475 aaKnown RBP16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 WWC2Q6AWC2 1192 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 BLIDQ8IZY5 108 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 CCDC150Q8NCX0 1101 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 COA1Q9GZY4 146 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 RAD17O75943 681 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 PFKFB1P16118 471 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 PTGS1P23219 599 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 FERMT2Q96AC1 680 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 COL5A2P05997 1499 aaPredicted RBP16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 CLRN2A0PK11 232 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 NF2P35240 595 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 CTAGE1Q96RT6 745 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 RNF26Q9BY78 433 aaPredicted RBP16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 GJB4Q9NTQ9 266 aa16.03■□□□□ 0.16
SHROOM1-203ENST00000378679 UBN2Q6ZU65 1347 aa16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 STXBP4Q6ZWJ1 553 aa16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 CLIC6Q96NY7 704 aa16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 ATF5Q9Y2D1 282 aaPredicted RBP16.02■□□□□ 0.16
SHROOM1-203ENST00000378679 KIF5CO60282 957 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 KIF4BQ2VIQ3 1234 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 CCDC181Q5TID7 509 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 BIN2Q9UBW5 565 aaPredicted RBP16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 RFX7Q2KHR2 1363 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 WDHD1O75717 1129 aaPredicted RBP16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 CYP2D6P10635 497 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 PICK1Q9NRD5 415 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 LRWD1Q9UFC0 647 aa16.02■□□□□ 0.15
SHROOM1-203ENST00000378679 GSG1L2A8MUP6 293 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 U2AF2P26368 475 aaKnown RBP eCLIP16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 ICA1Q05084 483 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 INF2Q27J81 1249 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 BRIP1Q9BX63 1249 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 PKD2L1Q9P0L9 805 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 CFBP00751 764 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 PPP4R3AQ6IN85 833 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 STOX1Q6ZVD7 989 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 PLCD3Q8N3E9 789 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 UBXN4Q92575 508 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 GLT8D2Q9H1C3 349 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 C21orf2O43822 256 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 PRR5LQ6MZQ0 368 aa16.01■□□□□ 0.15
SHROOM1-203ENST00000378679 VGLL3A8MV65 326 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 CMA1P23946 247 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 KIF23Q02241 960 aaPredicted RBP16■□□□□ 0.15
SHROOM1-203ENST00000378679 NR5A1Q13285 461 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 SV2BQ7L1I2 683 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 SCLT1Q96NL6 688 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 USP17L3A6NCW0 530 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 USP17L4A6NCW7 530 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 H7C1D1 291 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 USP17L1Q7RTZ2 530 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 SH3RF3Q8TEJ3 882 aaPredicted RBP16■□□□□ 0.15
SHROOM1-203ENST00000378679 CCDC17Q96LX7 622 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 RTEL1Q9NZ71 1219 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 KIAA1468Q9P260 1216 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 SERTAD1Q9UHV2 236 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 FMNL1O95466 1100 aaPredicted RBP16■□□□□ 0.15
SHROOM1-203ENST00000378679 CCT6AP40227 531 aaKnown RBP16■□□□□ 0.15
SHROOM1-203ENST00000378679 HSP90B2PQ58FF3 399 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 CYB5R4Q7L1T6 521 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 ZBTB21Q9ULJ3 1066 aa16■□□□□ 0.15
SHROOM1-203ENST00000378679 ZNF609O15014 1411 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 SP4Q02446 784 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 POSTNQ15063 836 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 CSRNP1Q96S65 589 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 DCP1AQ9NPI6 582 aaPredicted RBP15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 IFT172Q9UG01 1749 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 NDUFA8P51970 172 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 SLFN13Q68D06 897 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 CC2D2BQ6DHV5 1058 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 PAXIP1Q6ZW49 1069 aaPredicted RBP15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 ABCC12Q96J65 1359 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 NEDD4P46934 1319 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 GTF2F1P35269 517 aaKnown RBP eCLIP15.99■□□□□ 0.157e-8■■■□□ 15.4
SHROOM1-203ENST00000378679 SNW1Q13573 536 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 SLC39A14Q15043 492 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 TSGA10IPQ3SY00 556 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 MB21D2Q8IYB1 491 aaPredicted RBP15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 TTLL6Q8N841 843 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 SNX29Q8TEQ0 813 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 STAG1Q8WVM7 1258 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 RUFY1Q96T51 708 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 NAP1L4Q99733 375 aaKnown RBP15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 RCOR1Q9UKL0 485 aa15.99■□□□□ 0.15
SHROOM1-203ENST00000378679 GPSM2P81274 684 aa15.98■□□□□ 0.15
SHROOM1-203ENST00000378679 EN1Q05925 392 aaPredicted RBP15.98■□□□□ 0.15
SHROOM1-203ENST00000378679 ALX1Q15699 326 aa15.98■□□□□ 0.15
SHROOM1-203ENST00000378679 KIFC2Q96AC6 838 aa15.98■□□□□ 0.15
SHROOM1-203ENST00000378679 TAF6LQ9Y6J9 622 aa15.98■□□□□ 0.15
SHROOM1-203ENST00000378679 PDE4DQ08499 809 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms