RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RBM28Q9NW13 759 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 ZNF831Q5JPB2 1677 aa21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 TSPY2A6NKD2 308 aa21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 ZNF174Q15697 407 aa21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 CFAP100Q494V2 611 aa21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 CCAR2Q8N163 923 aaKnown RBP21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 ATP8A2Q9NTI2 1148 aa21.02■□□□□ 0.96
SHKBP1-201ENST00000291842 SFPQP23246 707 aaKnown RBP eCLIP21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 RFC4P35249 363 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 PTPN14Q15678 1187 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 CTCFLQ8NI51 663 aaPredicted RBP21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 HOOK1Q9UJC3 728 aaKnown RBP21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 BTAF1O14981 1849 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 A0A087X0B3 334 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 TMEM232C9JQI7 657 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 CALM1P0DP23 149 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 CALM2P0DP24 149 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 CALM3P0DP25 149 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 NFIXQ14938 502 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 DHX58Q96C10 678 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 MAP7D2Q96T17 732 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 USP21Q9UK80 565 aa21.01■□□□□ 0.95
SHKBP1-201ENST00000291842 CNTNAP5Q8WYK1 1306 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 ADAMTS3O15072 1205 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 ACTN4O43707 911 aaKnown RBP21■□□□□ 0.95
SHKBP1-201ENST00000291842 ORC4O43929 436 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 DDAH1O94760 285 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 PCP11498 1178 aaKnown RBP21■□□□□ 0.95
SHKBP1-201ENST00000291842 GOLGA8FQ08AF8 430 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 GOLGA8DPQ0D2H9 430 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 GRIK5Q16478 980 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 TRMT44Q8IYL2 757 aaKnown RBP21■□□□□ 0.95
SHKBP1-201ENST00000291842 ZNF579Q8NAF0 562 aaKnown RBP21■□□□□ 0.95
SHKBP1-201ENST00000291842 SMARCE1Q969G3 411 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 DYNLL2Q96FJ2 89 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 UBAP1LF5GYI3 381 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 CASP1P29466 404 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 FMR1Q06787 632 aaKnown RBP eCLIP21■□□□□ 0.95
SHKBP1-201ENST00000291842 DIXDC1Q155Q3 683 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 NPY5RQ15761 445 aa21■□□□□ 0.95
SHKBP1-201ENST00000291842 AFMP43652 599 aa20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 CCDC150Q8NCX0 1101 aa20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 ARPP21Q9UBL0 812 aaPredicted RBP20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 RGL2O15211 777 aa20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 E4F1Q66K89 784 aaPredicted RBP20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 NYAP1Q6ZVC0 841 aa20.99■□□□□ 0.95
SHKBP1-201ENST00000291842 PDS5AQ29RF7 1337 aaKnown RBP20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 IRS2Q9Y4H2 1338 aa20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 USP5P45974 858 aa20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 NAA30Q147X3 362 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 CCDC112Q8NEF3 446 aa20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 SH3RF3Q8TEJ3 882 aaPredicted RBP20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 MTMR7Q9Y216 660 aa20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 PAXBP1Q9Y5B6 917 aa20.98■□□□□ 0.95
SHKBP1-201ENST00000291842 CTIFO43310 598 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 LDHBP07195 334 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 TFAP4Q01664 338 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 TRAPPC3LQ5T215 181 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 RCSD1Q6JBY9 416 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 FAM196AQ6ZSG2 479 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 SYMPKQ92797 1274 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 BRMS1Q9HCU9 246 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 TNRC6CQ9HCJ0 1690 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 COL24A1Q17RW2 1714 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 SARSP49591 514 aaKnown RBP20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 PIK3AP1Q6ZUJ8 805 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 EP400Q96L91 3159 aa20.97■□□□□ 0.95
SHKBP1-201ENST00000291842 NLRP5P59047 1200 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 MORC3Q14149 939 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 SBK1Q52WX2 424 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 NT5DC1Q5TFE4 455 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 ELOA2Q8IYF1 753 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 FNBP4Q8N3X1 1017 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 TNFRSF25Q93038 417 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 NFE2L3Q9Y4A8 694 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 VWA3AA6NCI4 1184 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 TTC38Q5R3I4 469 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 SPTY2D1Q68D10 685 aaPredicted RBP20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 MTERF4Q7Z6M4 381 aaKnown RBP20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 IL17RBQ9NRM6 502 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 INTS13Q9NVM9 706 aa20.96■□□□□ 0.95
SHKBP1-201ENST00000291842 CBFA2T2O43439 604 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 SCG2P13521 617 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 PTGDRQ13258 359 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 GRAPQ13588 217 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 CNBD1Q8NA66 436 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 GRAPLQ8TC17 118 aaPredicted RBP20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 STAMQ92783 540 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 MED15Q96RN5 788 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 KAT14Q9H8E8 782 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 DLEC1Q9Y238 1755 aa20.95■□□□□ 0.94
SHKBP1-201ENST00000291842 CCDC88AQ3V6T2 1871 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 USP17L3A6NCW0 530 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 USP17L4A6NCW7 530 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 CDK11BP21127 795 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 C12orf60Q5U649 245 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 USP17L1Q7RTZ2 530 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 VSTM4Q8IW00 320 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 STAG2Q8N3U4 1231 aa20.94■□□□□ 0.94
SHKBP1-201ENST00000291842 SLC44A5Q8NCS7 719 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms