RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.68■□□□□ 0.9
PCDH1-201ENST00000287008 ARHGEF16Q5VV41 709 aa20.68■□□□□ 0.9
PCDH1-201ENST00000287008 PPP1R9BQ96SB3 815 aa20.68■□□□□ 0.9
PCDH1-201ENST00000287008 SEC31BQ9NQW1 1179 aa20.68■□□□□ 0.9
PCDH1-201ENST00000287008 FAM47CQ5HY64 1035 aa20.68■□□□□ 0.9
PCDH1-201ENST00000287008 MIER3Q7Z3K6 550 aa20.68■□□□□ 0.9
PCDH1-201ENST00000287008 KDM5AP29375 1690 aaKnown RBP20.67■□□□□ 0.9
PCDH1-201ENST00000287008 KARSQ15046 597 aaKnown RBP20.67■□□□□ 0.9
PCDH1-201ENST00000287008 ERFEQ4G0M1 354 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 SPECC1LQ69YQ0 1117 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 PLCD3Q8N3E9 789 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 ARFGAP3Q9NP61 516 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.67■□□□□ 0.9
PCDH1-201ENST00000287008 HEG1Q9ULI3 1381 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 CLRN2A0PK11 232 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 POLR2MP0CAP2 368 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 MCF2L2Q86YR7 1114 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 BLIDQ8IZY5 108 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 IGSF22Q8N9C0 903 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 DBNLQ9UJU6 430 aaKnown RBP20.67■□□□□ 0.9
PCDH1-201ENST00000287008 GCNT3O95395 438 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 ADORA1P30542 326 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 SNX16P57768 344 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 CCDC93Q567U6 631 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 GOLGA1Q92805 767 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 GTF3C6Q969F1 213 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 CSRNP1Q96S65 589 aa20.67■□□□□ 0.9
PCDH1-201ENST00000287008 IWS1Q96ST2 819 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 MRPL44Q9H9J2 332 aaKnown RBP20.66■□□□□ 0.9
PCDH1-201ENST00000287008 ADD1P35611 737 aaKnown RBP20.66■□□□□ 0.9
PCDH1-201ENST00000287008 MRPS9P82933 396 aaKnown RBP20.66■□□□□ 0.9
PCDH1-201ENST00000287008 TRIM14Q14142 442 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 BMS1Q14692 1282 aaKnown RBP20.66■□□□□ 0.9
PCDH1-201ENST00000287008 CCDC122Q5T0U0 273 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 MYSM1Q5VVJ2 828 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 MICALCLQ6ZW33 695 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 DBNDD1Q9H9R9 158 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 TXNDC16Q9P2K2 825 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 SUPT20HL1Q3ZLR7 823 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 TMEM232C9JQI7 657 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 SPOPO43791 374 aa20.66■□□□□ 0.9
PCDH1-201ENST00000287008 FRMPD2Q68DX3 1309 aaPredicted RBP20.66■□□□□ 0.9
PCDH1-201ENST00000287008 ZNF569Q5MCW4 686 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 MAK16Q9BXY0 300 aaKnown RBP20.65■□□□□ 0.9
PCDH1-201ENST00000287008 SYNRGQ9UMZ2 1314 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 PTH1RQ03431 593 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 ATF5Q9Y2D1 282 aaPredicted RBP20.65■□□□□ 0.9
PCDH1-201ENST00000287008 PALLDQ8WX93 1383 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 RNF34Q969K3 372 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 TBC1D7Q9P0N9 293 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 PCDHA12Q9UN75 941 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 TSPOAP1O95153 1857 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 MMP10P09238 476 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 CD19P15391 556 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 CDC37L1Q7L3B6 337 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 NELFCDQ8IXH7 590 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 KIAA1524Q8TCG1 905 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 BAG1Q99933 345 aaPredicted RBP20.65■□□□□ 0.9
PCDH1-201ENST00000287008 CLSTN2Q9H4D0 955 aa20.65■□□□□ 0.9
PCDH1-201ENST00000287008 DEPTORQ8TB45 409 aa20.64■□□□□ 0.9
PCDH1-201ENST00000287008 KDM2BQ8NHM5 1336 aa20.64■□□□□ 0.9
PCDH1-201ENST00000287008 PRAMEF22A3QJZ6 481 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 XRCC6P12956 609 aaKnown RBP eCLIP20.64■□□□□ 0.89
PCDH1-201ENST00000287008 PRR16Q569H4 304 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 KDM3AQ9Y4C1 1321 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 ADGBQ8N7X0 1667 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 GOLGA8HP0CJ92 632 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 SCG2P13521 617 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 LIN9Q5TKA1 542 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 STAMQ92783 540 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 CALCOCO2Q13137 446 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 ME3Q16798 604 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 NCAPG2Q86XI2 1143 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 ATG3Q9NT62 314 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 ZKSCAN5Q9Y2L8 839 aa20.64■□□□□ 0.89
PCDH1-201ENST00000287008 DTNBO60941 627 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 KRT9P35527 623 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 POSTNQ15063 836 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 GPATCH4Q5T3I0 446 aaKnown RBP20.63■□□□□ 0.89
PCDH1-201ENST00000287008 RNF187Q5TA31 235 aaPredicted RBP20.63■□□□□ 0.89
PCDH1-201ENST00000287008 NFE2L3Q9Y4A8 694 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 RNF123Q5XPI4 1314 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 SEL1L2Q5TEA6 688 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 CMTR1Q8N1G2 835 aaKnown RBP20.63■□□□□ 0.89
PCDH1-201ENST00000287008 CAPZA3Q96KX2 299 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 TRPC6Q9Y210 931 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 PCDHA1Q9Y5I3 950 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 TNNC1P63316 161 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 CCNA1P78396 465 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 GALNT17Q6IS24 598 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 NOSTRINQ8IVI9 506 aa20.63■□□□□ 0.89
PCDH1-201ENST00000287008 SRP68Q9UHB9 627 aaKnown RBP20.63■□□□□ 0.89
PCDH1-201ENST00000287008 CNGA1P29973 690 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 TUBB4BP68371 445 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 CLEC4GQ6UXB4 293 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 MTRF1LQ9UGC7 380 aaKnown RBP20.62■□□□□ 0.89
PCDH1-201ENST00000287008 SSH2Q76I76 1423 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 RAD17O75943 681 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 DDAH1O94760 285 aa20.62■□□□□ 0.89
PCDH1-201ENST00000287008 FOSP01100 380 aaPredicted RBP20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms