RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 RASGRF1Q13972 1273 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 PLS1Q14651 629 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 STRIP1Q5VSL9 837 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 KRT40Q6A162 431 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 FBXO11Q86XK2 927 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 AK8Q96MA6 479 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 IMPG2Q9BZV3 1241 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 RIPOR2Q9Y4F9 1068 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 CALUO43852 315 aaPredicted RBP15.41■□□□□ 0.06
LDLR-201ENST00000252444 TSGA10IPQ3SY00 556 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 OTUD6AQ7L8S5 288 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 JPH2Q9BR39 696 aaPredicted RBP15.41■□□□□ 0.06
LDLR-201ENST00000252444 AMNQ9BXJ7 453 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 GBP3Q9H0R5 595 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 CLIP2Q9UDT6 1046 aa15.41■□□□□ 0.06
LDLR-201ENST00000252444 SEMA3FQ13275 785 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 SLC15A2Q16348 729 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 CCDC181Q5TID7 509 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 SLFN13Q68D06 897 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 BLIDQ8IZY5 108 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 GOLGA5Q8TBA6 731 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 IFT74Q96LB3 600 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 ZNF341Q9BYN7 854 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 TEX35Q5T0J7 233 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 ZNF592Q92610 1267 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 TRIML1Q8N9V2 468 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 DDX12PQ92771 950 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 BICD1Q96G01 975 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 ALS2CR12Q96Q35 445 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 TFIP11Q9UBB9 837 aaKnown RBP15.4■□□□□ 0.06
LDLR-201ENST00000252444 DOK7Q18PE1 504 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 ARHGAP29Q52LW3 1261 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 CCAR2Q8N163 923 aaKnown RBP15.4■□□□□ 0.06
LDLR-201ENST00000252444 UBA5Q9GZZ9 404 aa15.4■□□□□ 0.06
LDLR-201ENST00000252444 ZNF609O15014 1411 aa15.39■□□□□ 0.06
LDLR-201ENST00000252444 ANKRD62A6NC57 917 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 MECOMQ03112 1051 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.39■□□□□ 0.05
LDLR-201ENST00000252444 BEGAINQ9BUH8 593 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 SPC25Q9HBM1 224 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ADD3Q9UEY8 706 aaKnown RBP15.39■□□□□ 0.05
LDLR-201ENST00000252444 POTEB2H3BUK9 544 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ORC4O43929 436 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ECE2O60344 883 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 VWA3BQ502W6 1294 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 HHIPL2Q6UWX4 724 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 MLKLQ8NB16 471 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 GNA14O95837 355 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ASNSP08243 561 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 SIRT2Q8IXJ6 389 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 CNPY2Q9Y2B0 182 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 ZFYVE27Q5T4F4 411 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 KIAA0825Q8IV33 1275 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 SYNE4Q8N205 404 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 PLVAPQ9BX97 442 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 FBXO40Q9UH90 709 aa15.39■□□□□ 0.05
LDLR-201ENST00000252444 PRPF3O43395 683 aaKnown RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 ENTPD3O75355 529 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 PRR5LQ6MZQ0 368 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 SH2B2O14492 632 aaPredicted RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 LONP1P36776 959 aaKnown RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 HS1BP3Q53T59 392 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 KIF5CO60282 957 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 CAMK4Q16566 473 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 CALCRLQ16602 461 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 SBK1Q52WX2 424 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 CSRNP1Q96S65 589 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 STRBPQ96SI9 672 aaKnown RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 AZI2Q9H6S1 392 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 AHDC1Q5TGY3 1603 aaPredicted RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 M0R2C6 588 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 MCM7P33993 719 aa15.38■□□□□ 0.05
LDLR-201ENST00000252444 DNM1Q05193 864 aaKnown RBP15.38■□□□□ 0.05
LDLR-201ENST00000252444 CYLC1P35663 651 aaPredicted RBP15.37■□□□□ 0.05
LDLR-201ENST00000252444 DNM2P50570 870 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 SNX16P57768 344 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 FKBP1AP62942 108 aaKnown RBP15.37■□□□□ 0.05
LDLR-201ENST00000252444 ZSCAN23Q3MJ62 389 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 BRD1O95696 1058 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 CCT6AP40227 531 aaKnown RBP15.37■□□□□ 0.05
LDLR-201ENST00000252444 CRKP46108 304 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 AP3B2Q13367 1082 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 PDIA6Q15084 440 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 NOSTRINQ8IVI9 506 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 HACE1Q8IYU2 909 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 CLSTN2Q9H4D0 955 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 IFNAR1P17181 557 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 FERMT1Q9BQL6 677 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 ZNRF3Q9ULT6 936 aa15.37■□□□□ 0.05
LDLR-201ENST00000252444 HSP90B2PQ58FF3 399 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 SHPRHQ149N8 1683 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 KLRF2D3W0D1 207 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 MCAMP43121 646 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 PTH1RQ03431 593 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 SEPT2Q15019 361 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 INTS5Q6P9B9 1019 aaKnown RBP15.36■□□□□ 0.05
LDLR-201ENST00000252444 DNM3Q9UQ16 869 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 SMCO2A6NFE2 343 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 CUL4AQ13619 759 aa15.36■□□□□ 0.05
LDLR-201ENST00000252444 LETM2Q2VYF4 491 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms