RNA–Protein interactions for RNA: ENSMUST00000108530.1

Nup88-202, Transcript of Nuclear pore complex protein Nup88, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nup88, Length 2,389 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-202ENSMUST00000108530 Lce1mQ9CR91 182 aa7.51□□□□□ -1.21
Nup88-202ENSMUST00000108530 Gm3880A0A1B0GSB3 72 aa7.45□□□□□ -1.22
Nup88-202ENSMUST00000108530 Pla2g10Q9QXX3 151 aa7.44□□□□□ -1.22
Nup88-202ENSMUST00000108530 Gm20537G3UYK7 97 aa7.42□□□□□ -1.22
Nup88-202ENSMUST00000108530 Sec61bQ9CQS8 96 aaKnown RBP7.41□□□□□ -1.22
Nup88-202ENSMUST00000108530 Gm10382Q3V0T5 144 aa7.39□□□□□ -1.23
Nup88-202ENSMUST00000108530 Gm17606F6ZL36 78 aa7.37□□□□□ -1.23
Nup88-202ENSMUST00000108530 Crct1Q6PAI5 102 aa7.37□□□□□ -1.23
Nup88-202ENSMUST00000108530 2210017I01RikA0A0A6YVV1 95 aa7.35□□□□□ -1.23
Nup88-202ENSMUST00000108530 Krtap3-1A2A591 98 aa7.35□□□□□ -1.23
Nup88-202ENSMUST00000108530 Ush2AQ2QI47 5193 aa7.35□□□□□ -1.23
Nup88-202ENSMUST00000108530 Gm10318A0A1W2P728 225 aa7.33□□□□□ -1.24
Nup88-202ENSMUST00000108530 Krtap13-1Q8K198 168 aa7.32□□□□□ -1.24
Nup88-202ENSMUST00000108530 Gm12216A0A1W2P827 62 aa7.3□□□□□ -1.24
Nup88-202ENSMUST00000108530 Ubr4A2AN08 5180 aa7.29□□□□□ -1.24
Nup88-202ENSMUST00000108530 CriptO70333 101 aa7.28□□□□□ -1.24
Nup88-202ENSMUST00000108530 Hmcn2A2AJ76 5100 aa7.27□□□□□ -1.24
Nup88-202ENSMUST00000108530 Krtap16-3Q8C1I6 86 aa7.25□□□□□ -1.25
Nup88-202ENSMUST00000108530 Gm18596A0A1W2P860 280 aa7.23□□□□□ -1.25
Nup88-202ENSMUST00000108530 ZanO88799 5376 aa7.17□□□□□ -1.26
Nup88-202ENSMUST00000108530 Krtap19-1Q925H2 87 aa7.16□□□□□ -1.26
Nup88-202ENSMUST00000108530 Gm9955Q8CEJ8 102 aa7.15□□□□□ -1.27
Nup88-202ENSMUST00000108530 Krtap19-3Q925H6 87 aa7.13□□□□□ -1.27
Nup88-202ENSMUST00000108530 Fam229aB2KGE5 128 aa7.12□□□□□ -1.27
Nup88-202ENSMUST00000108530 Krtap1-5A2A590 122 aa7.11□□□□□ -1.27
Nup88-202ENSMUST00000108530 4932415D10RikA0A1W2P6U8 4986 aa7.11□□□□□ -1.27
Nup88-202ENSMUST00000108530 Krtap1-3A2A588 173 aa7.05□□□□□ -1.28
Nup88-202ENSMUST00000108530 BC029722A0A0N4SW31 51 aa7.03□□□□□ -1.28
Nup88-202ENSMUST00000108530 Gm9789Q8BIG3 52 aa7.03□□□□□ -1.28
Nup88-202ENSMUST00000108530 Romo1P60603 79 aa6.98□□□□□ -1.29
Nup88-202ENSMUST00000108530 Fat4Q2PZL6 4981 aa6.98□□□□□ -1.29
Nup88-202ENSMUST00000108530 Gm19402J3QJV4 266 aa6.96□□□□□ -1.3
Nup88-202ENSMUST00000108530 Prm1P02319 51 aa6.95□□□□□ -1.3
Nup88-202ENSMUST00000108530 Gm7735D3YX18 52 aa6.94□□□□□ -1.3
Nup88-202ENSMUST00000108530 LorP18165 486 aa6.93□□□□□ -1.3
Nup88-202ENSMUST00000108530 Gm21887J3QQ04 176 aa6.88□□□□□ -1.31
Nup88-202ENSMUST00000108530 Gm19426M0QWC7 77 aa6.87□□□□□ -1.31
Nup88-202ENSMUST00000108530 Mp68P56379 58 aa6.87□□□□□ -1.31
Nup88-202ENSMUST00000108530 Rnf213E9Q555 5152 aaKnown RBP6.82□□□□□ -1.32
Nup88-202ENSMUST00000108530 Gm20538F6Z9R1 75 aa6.79□□□□□ -1.32
Nup88-202ENSMUST00000108530 Spink7Q6IE32 76 aa6.79□□□□□ -1.32
Nup88-202ENSMUST00000108530 B930094E09RikQ8C4T2 136 aa6.77□□□□□ -1.32
Nup88-202ENSMUST00000108530 Krtap1-4Q3V2D6 188 aa6.75□□□□□ -1.33
Nup88-202ENSMUST00000108530 Lce1jD3YUU5 139 aa6.64□□□□□ -1.35
Nup88-202ENSMUST00000108530 Gm17402F6Z0L5 76 aa6.64□□□□□ -1.35
Nup88-202ENSMUST00000108530 Sprr2a3Q4KL71 83 aa6.62□□□□□ -1.35
Nup88-202ENSMUST00000108530 Sprr2a1Q9CQK8 83 aa6.62□□□□□ -1.35
Nup88-202ENSMUST00000108530 Krtap12-1Q9Z287 130 aa6.53□□□□□ -1.36
Nup88-202ENSMUST00000108530 SspoQ8CG65 4998 aa6.52□□□□□ -1.37
Nup88-202ENSMUST00000108530 Krtap17-1A2A5X6 109 aa6.51□□□□□ -1.37
Nup88-202ENSMUST00000108530 Krtap7-1Q9D3I6 87 aa6.48□□□□□ -1.37
Nup88-202ENSMUST00000108530 Ndufaf8A2AMZ4 74 aa6.44□□□□□ -1.38
Nup88-202ENSMUST00000108530 Krtap19-9aF8WH65 55 aa6.44□□□□□ -1.38
Nup88-202ENSMUST00000108530 Gm19668J3QMD1 248 aa6.38□□□□□ -1.39
Nup88-202ENSMUST00000108530 Prm2P07978 107 aa6.37□□□□□ -1.39
Nup88-202ENSMUST00000108530 Krtap19-2Q925I0 141 aa6.34□□□□□ -1.39
Nup88-202ENSMUST00000108530 Gm10061D3Z714 54 aa6.33□□□□□ -1.4
Nup88-202ENSMUST00000108530 Krtap9-5A2A5X3 358 aa6.33□□□□□ -1.4
Nup88-202ENSMUST00000108530 Camk2n1Q6QWF9 78 aa6.26□□□□□ -1.41
Nup88-202ENSMUST00000108530 Lce1iQ9D6P5 149 aa6.22□□□□□ -1.41
Nup88-202ENSMUST00000108530 Gm40193A0A1B0GT39 78 aa6.17□□□□□ -1.42
Nup88-202ENSMUST00000108530 Lce1a2Q9D1K4 149 aa6.16□□□□□ -1.42
Nup88-202ENSMUST00000108530 Muc5bE9Q5I3 4800 aa6.1□□□□□ -1.43
Nup88-202ENSMUST00000108530 Gm11569B1AQB1 180 aa6.02□□□□□ -1.45
Nup88-202ENSMUST00000108530 Gm6358A0A087WPH4 74 aa5.99□□□□□ -1.45
Nup88-202ENSMUST00000108530 Krtap8-1O08633 61 aa5.91□□□□□ -1.46
Nup88-202ENSMUST00000108530 Mdn1A2ANY6 5589 aaKnown RBP5.9□□□□□ -1.46
Nup88-202ENSMUST00000108530 Mt2P02798 61 aa5.88□□□□□ -1.47
Nup88-202ENSMUST00000108530 Krtap19-9bQ99NG9 58 aa5.86□□□□□ -1.47
Nup88-202ENSMUST00000108530 Gm9112A2AI92 75 aa5.81□□□□□ -1.48
Nup88-202ENSMUST00000108530 Krtap9-3Q3V2C1 136 aa5.72□□□□□ -1.49
Nup88-202ENSMUST00000108530 Tnp1P10856 55 aa5.71□□□□□ -1.5
Nup88-202ENSMUST00000108530 Lce1hQ9D6R3 140 aa5.63□□□□□ -1.51
Nup88-202ENSMUST00000108530 Krtap4-6Q3V4B7 195 aa5.53□□□□□ -1.52
Nup88-202ENSMUST00000108530 Krtap22-2J3QNX6 67 aa5.52□□□□□ -1.53
Nup88-202ENSMUST00000108530 Krtap4-2B1AQ85 167 aa5.48□□□□□ -1.53
Nup88-202ENSMUST00000108530 Lce1gQ9D195 139 aa5.48□□□□□ -1.53
Nup88-202ENSMUST00000108530 Syne2Q6ZWQ0 6874 aaKnown RBP5.46□□□□□ -1.54
Nup88-202ENSMUST00000108530 Gm11555B1AQ89 175 aa5.45□□□□□ -1.54
Nup88-202ENSMUST00000108530 A0A1Y7VJH8 109 aa5.4□□□□□ -1.54
Nup88-202ENSMUST00000108530 Krtap4-1Q3UUY3 169 aa5.4□□□□□ -1.54
Nup88-202ENSMUST00000108530 2310046K23RikA0A0A6YVW6 87 aa5.36□□□□□ -1.55
Nup88-202ENSMUST00000108530 Gm11596B1AQB0 205 aa5.34□□□□□ -1.55
Nup88-202ENSMUST00000108530 Fsip2A2ARZ3 6995 aa5.29□□□□□ -1.56
Nup88-202ENSMUST00000108530 Gm11564A2A4L9 201 aa5.23□□□□□ -1.57
Nup88-202ENSMUST00000108530 Gm11563B1AQ90 168 aa5.23□□□□□ -1.57
Nup88-202ENSMUST00000108530 Gm11595B1AQA7 289 aa5.23□□□□□ -1.57
Nup88-202ENSMUST00000108530 Krtap4-8B1AQA8 209 aa5.23□□□□□ -1.57
Nup88-202ENSMUST00000108530 Gm10272F7CZ33 110 aa5.22□□□□□ -1.57
Nup88-202ENSMUST00000108530 Mt4P47945 62 aa5.17□□□□□ -1.58
Nup88-202ENSMUST00000108530 Krtap28-10A0A1Y7VP58 119 aa5.16□□□□□ -1.58
Nup88-202ENSMUST00000108530 Krtap4-9B1AQA9 244 aa5.12□□□□□ -1.59
Nup88-202ENSMUST00000108530 Lce1dQ9D731 133 aa5.09□□□□□ -1.59
Nup88-202ENSMUST00000108530 Gm38119A0A0A6YX29 146 aa5.06□□□□□ -1.6
Nup88-202ENSMUST00000108530 Gm11562A0PK51 136 aa5.05□□□□□ -1.6
Nup88-202ENSMUST00000108530 Syne1Q6ZWR6 8799 aa5.04□□□□□ -1.6
Nup88-202ENSMUST00000108530 Lce1bQ9D149 137 aa4.98□□□□□ -1.61
Nup88-202ENSMUST00000108530 Krtap4-13Q9D7P3 165 aa4.96□□□□□ -1.62
Nup88-202ENSMUST00000108530 A0A1Y7VLE6 161 aa4.94□□□□□ -1.62
Nup88-202ENSMUST00000108530 Lce1eQ9D139 143 aa4.9□□□□□ -1.62
Retrieved 100 of 22,080 RNA–protein pairs in 7.6 ms