RNA–Protein interactions for RNA: ENSMUST00000022220.12

Msh3-201, Transcript of DNA mismatch repair protein Msh3, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Msh3, Length 3,937 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3-201ENSMUST00000022220 Dync1h1Q9JHU4 4644 aaKnown RBP5.36□□□□□ -1.55
Msh3-201ENSMUST00000022220 Gm17416Q30KP4 66 aa5.35□□□□□ -1.55
Msh3-201ENSMUST00000022220 Dnah7cA0A087WR13 4024 aa5.34□□□□□ -1.55
Msh3-201ENSMUST00000022220 Kiaa1109A2AAE1 5005 aa5.34□□□□□ -1.55
Msh3-201ENSMUST00000022220 Dnah2P0C6F1 4456 aa5.32□□□□□ -1.56
Msh3-201ENSMUST00000022220 Hectd4E9Q2E4 4418 aa5.31□□□□□ -1.56
Msh3-201ENSMUST00000022220 2210017I01RikA0A0A6YVV1 95 aa5.29□□□□□ -1.56
Msh3-201ENSMUST00000022220 Dnah7aE9Q0T8 4024 aa5.28□□□□□ -1.56
Msh3-201ENSMUST00000022220 Herc2Q4U2R1 4836 aa5.28□□□□□ -1.56
Msh3-201ENSMUST00000022220 Fat1A0A1L1SQU7 4645 aa5.27□□□□□ -1.57
Msh3-201ENSMUST00000022220 SacsQ9JLC8 4582 aa5.26□□□□□ -1.57
Msh3-201ENSMUST00000022220 Lrp2A2ARV4 4660 aa5.26□□□□□ -1.57
Msh3-201ENSMUST00000022220 Krtap13-1Q8K198 168 aa5.25□□□□□ -1.57
Msh3-201ENSMUST00000022220 Gm40193A0A1B0GT39 78 aa5.23□□□□□ -1.57
Msh3-201ENSMUST00000022220 Krtap3-1A2A591 98 aa5.22□□□□□ -1.57
Msh3-201ENSMUST00000022220 Krtap7-1Q9D3I6 87 aa5.16□□□□□ -1.58
Msh3-201ENSMUST00000022220 Vps13bQ80TY5 3993 aa5.15□□□□□ -1.58
Msh3-201ENSMUST00000022220 Pkd1O08852 4293 aa5.12□□□□□ -1.59
Msh3-201ENSMUST00000022220 Gm19668J3QMD1 248 aa5.08□□□□□ -1.6
Msh3-201ENSMUST00000022220 Ryr2E9Q401 4966 aaKnown RBP5.07□□□□□ -1.6
Msh3-201ENSMUST00000022220 Abca13Q5SSE9 5034 aa5.05□□□□□ -1.6
Msh3-201ENSMUST00000022220 Dnah8Q91XQ0 4731 aa5.04□□□□□ -1.6
Msh3-201ENSMUST00000022220 Gm18596A0A1W2P860 280 aa5.03□□□□□ -1.6
Msh3-201ENSMUST00000022220 Gm17402F6Z0L5 76 aa4.99□□□□□ -1.61
Msh3-201ENSMUST00000022220 LorP18165 486 aa4.97□□□□□ -1.61
Msh3-201ENSMUST00000022220 Fat2Q5F226 4351 aa4.97□□□□□ -1.61
Msh3-201ENSMUST00000022220 Gm19402J3QJV4 266 aa4.94□□□□□ -1.62
Msh3-201ENSMUST00000022220 Dnhd1D3Z2X2 4750 aa4.91□□□□□ -1.62
Msh3-201ENSMUST00000022220 Kmt2cQ8BRH4 4903 aa4.87□□□□□ -1.63
Msh3-201ENSMUST00000022220 Tnp1P10856 55 aa4.87□□□□□ -1.63
Msh3-201ENSMUST00000022220 Pkhd1E9PZ36 4059 aa4.86□□□□□ -1.63
Msh3-201ENSMUST00000022220 Lce1mQ9CR91 182 aa4.84□□□□□ -1.63
Msh3-201ENSMUST00000022220 Krtap1-5A2A590 122 aa4.82□□□□□ -1.64
Msh3-201ENSMUST00000022220 Pkhd1l1Q80ZA4 4249 aa4.82□□□□□ -1.64
Msh3-201ENSMUST00000022220 PcloQ9QYX7 5068 aa4.8□□□□□ -1.64
Msh3-201ENSMUST00000022220 Herc1E9PZP8 4859 aa4.78□□□□□ -1.64
Msh3-201ENSMUST00000022220 Sprr2a3Q4KL71 83 aa4.77□□□□□ -1.65
Msh3-201ENSMUST00000022220 Sprr2a1Q9CQK8 83 aa4.77□□□□□ -1.65
Msh3-201ENSMUST00000022220 Krtap16-3Q8C1I6 86 aa4.75□□□□□ -1.65
Msh3-201ENSMUST00000022220 Birc6O88738 4882 aa4.74□□□□□ -1.65
Msh3-201ENSMUST00000022220 Ubr4A2AN08 5180 aa4.71□□□□□ -1.65
Msh3-201ENSMUST00000022220 Krtap1-4Q3V2D6 188 aa4.71□□□□□ -1.66
Msh3-201ENSMUST00000022220 Krtap19-3Q925H6 87 aa4.71□□□□□ -1.66
Msh3-201ENSMUST00000022220 Krtap19-1Q925H2 87 aa4.65□□□□□ -1.67
Msh3-201ENSMUST00000022220 Krtap19-9aF8WH65 55 aa4.6□□□□□ -1.67
Msh3-201ENSMUST00000022220 Krtap12-1Q9Z287 130 aa4.6□□□□□ -1.67
Msh3-201ENSMUST00000022220 Mdn1A2ANY6 5589 aaKnown RBP4.56□□□□□ -1.68
Msh3-201ENSMUST00000022220 Krtap1-3A2A588 173 aa4.53□□□□□ -1.68
Msh3-201ENSMUST00000022220 4932415D10RikA0A1W2P6U8 4986 aa4.51□□□□□ -1.69
Msh3-201ENSMUST00000022220 Gm7735D3YX18 52 aa4.46□□□□□ -1.7
Msh3-201ENSMUST00000022220 Prm1P02319 51 aa4.46□□□□□ -1.7
Msh3-201ENSMUST00000022220 Ush2AQ2QI47 5193 aa4.46□□□□□ -1.7
Msh3-201ENSMUST00000022220 Fat4Q2PZL6 4981 aa4.46□□□□□ -1.7
Msh3-201ENSMUST00000022220 Krtap9-5A2A5X3 358 aa4.44□□□□□ -1.7
Msh3-201ENSMUST00000022220 ZanO88799 5376 aa4.43□□□□□ -1.7
Msh3-201ENSMUST00000022220 Lce1jD3YUU5 139 aa4.42□□□□□ -1.7
Msh3-201ENSMUST00000022220 Gm9789Q8BIG3 52 aa4.39□□□□□ -1.71
Msh3-201ENSMUST00000022220 Rnf213E9Q555 5152 aaKnown RBP4.39□□□□□ -1.71
Msh3-201ENSMUST00000022220 Hmcn2A2AJ76 5100 aa4.35□□□□□ -1.71
Msh3-201ENSMUST00000022220 Gm6358A0A087WPH4 74 aa4.34□□□□□ -1.71
Msh3-201ENSMUST00000022220 Krtap8-1O08633 61 aa4.31□□□□□ -1.72
Msh3-201ENSMUST00000022220 Krtap19-9bQ99NG9 58 aa4.3□□□□□ -1.72
Msh3-201ENSMUST00000022220 Krtap19-2Q925I0 141 aa4.28□□□□□ -1.72
Msh3-201ENSMUST00000022220 Krtap17-1A2A5X6 109 aa4.22□□□□□ -1.73
Msh3-201ENSMUST00000022220 2310046K23RikA0A0A6YVW6 87 aa4.17□□□□□ -1.74
Msh3-201ENSMUST00000022220 Gm10061D3Z714 54 aa4.17□□□□□ -1.74
Msh3-201ENSMUST00000022220 Mt2P02798 61 aa4.16□□□□□ -1.74
Msh3-201ENSMUST00000022220 4933428G20RikQ9D3X4 101 aa4.16□□□□□ -1.74
Msh3-201ENSMUST00000022220 Sprr2kO70562 68 aa4.09□□□□□ -1.75
Msh3-201ENSMUST00000022220 Gm11569B1AQB1 180 aa4.06□□□□□ -1.76
Msh3-201ENSMUST00000022220 Lce1iQ9D6P5 149 aa4.06□□□□□ -1.76
Msh3-201ENSMUST00000022220 Lce1a2Q9D1K4 149 aa4.01□□□□□ -1.77
Msh3-201ENSMUST00000022220 Krtap22-2J3QNX6 67 aa4□□□□□ -1.77
Msh3-201ENSMUST00000022220 Syne1Q6ZWR6 8799 aa3.98□□□□□ -1.77
Msh3-201ENSMUST00000022220 Gm10272F7CZ33 110 aa3.96□□□□□ -1.78
Msh3-201ENSMUST00000022220 Fsip2A2ARZ3 6995 aa3.96□□□□□ -1.78
Msh3-201ENSMUST00000022220 Krtap9-3Q3V2C1 136 aa3.92□□□□□ -1.78
Msh3-201ENSMUST00000022220 Gm38119A0A0A6YX29 146 aa3.92□□□□□ -1.78
Msh3-201ENSMUST00000022220 Krtap4-6Q3V4B7 195 aa3.86□□□□□ -1.79
Msh3-201ENSMUST00000022220 Lce1hQ9D6R3 140 aa3.86□□□□□ -1.79
Msh3-201ENSMUST00000022220 Muc16A0A140LJ72 8478 aa3.82□□□□□ -1.8
Msh3-201ENSMUST00000022220 Krtap4-2B1AQ85 167 aa3.8□□□□□ -1.8
Msh3-201ENSMUST00000022220 Lce3bQ9CQM7 98 aa3.8□□□□□ -1.8
Msh3-201ENSMUST00000022220 Lce1dQ9D731 133 aa3.78□□□□□ -1.8
Msh3-201ENSMUST00000022220 Sprr2gO70558 76 aa3.76□□□□□ -1.81
Msh3-201ENSMUST00000022220 Mt4P47945 62 aa3.75□□□□□ -1.81
Msh3-201ENSMUST00000022220 Krtap4-1Q3UUY3 169 aa3.74□□□□□ -1.81
Msh3-201ENSMUST00000022220 Muc5bE9Q5I3 4800 aa3.73□□□□□ -1.81
Msh3-201ENSMUST00000022220 SspoQ8CG65 4998 aa3.73□□□□□ -1.81
Msh3-201ENSMUST00000022220 Lce3cQ91V05 98 aa3.72□□□□□ -1.81
Msh3-201ENSMUST00000022220 Lce1gQ9D195 139 aa3.71□□□□□ -1.82
Msh3-201ENSMUST00000022220 Gm10100J3QK64 120 aa3.7□□□□□ -1.82
Msh3-201ENSMUST00000022220 Gm11938Q9D3H4 131 aa3.65□□□□□ -1.83
Msh3-201ENSMUST00000022220 Syne2Q6ZWQ0 6874 aaKnown RBP3.64□□□□□ -1.83
Msh3-201ENSMUST00000022220 Gm11596B1AQB0 205 aa3.61□□□□□ -1.83
Msh3-201ENSMUST00000022220 Lce1eQ9D139 143 aa3.61□□□□□ -1.83
Msh3-201ENSMUST00000022220 Lce3eF8VQJ0 98 aa3.61□□□□□ -1.83
Msh3-201ENSMUST00000022220 Lce3fQ6PAI4 98 aa3.61□□□□□ -1.83
Msh3-201ENSMUST00000022220 Macf1Q9QXZ0 7354 aaKnown RBP3.6□□□□□ -1.83
Msh3-201ENSMUST00000022220 Krtap4-9B1AQA9 244 aa3.6□□□□□ -1.83
Retrieved 100 of 22,080 RNA–protein pairs in 340.1 ms