RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W ECI1Q05871 280 aa1.31□□□□□ -2.2
CDC39YCR093W YOR378WQ08902 515 aa1.31□□□□□ -2.2
CDC39YCR093W NTO1Q12311 748 aa1.31□□□□□ -2.2
CDC39YCR093W TRM732Q03496 1420 aa1.31□□□□□ -2.2
CDC39YCR093W CYB2P00175 591 aa1.31□□□□□ -2.2
CDC39YCR093W AFR1P33304 620 aa1.31□□□□□ -2.2
CDC39YCR093W YBL028CP38202 106 aa1.31□□□□□ -2.2
CDC39YCR093W TMN3P40071 706 aa1.31□□□□□ -2.2
CDC39YCR093W NDC80P40460 691 aa1.31□□□□□ -2.2
CDC39YCR093W HOS4P40480 1083 aa1.31□□□□□ -2.2
CDC39YCR093W BUD8P41698 603 aa1.31□□□□□ -2.2
CDC39YCR093W BAP3P41815 604 aa1.31□□□□□ -2.2
CDC39YCR093W YJL043WP47053 257 aa1.31□□□□□ -2.2
CDC39YCR093W VPS25P47142 202 aa1.31□□□□□ -2.2
CDC39YCR093W VPS4P52917 437 aa1.31□□□□□ -2.2
CDC39YCR093W RCO1Q04779 684 aa1.31□□□□□ -2.2
CDC39YCR093W ARP9Q05123 467 aa1.31□□□□□ -2.2
CDC39YCR093W COG4Q06096 861 aa1.31□□□□□ -2.2
CDC39YCR093W YBR126W-AQ8TGU7 68 aa1.31□□□□□ -2.2
CDC39YCR093W KGD2P19262 463 aaPredicted RBP1.3□□□□□ -2.2
CDC39YCR093W SHM2P37291 469 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W RFC1P38630 861 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W LRO1P40345 661 aa1.3□□□□□ -2.2
CDC39YCR093W PFK26P40433 827 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W MSE1P48525 536 aa1.3□□□□□ -2.2
CDC39YCR093W MUB1Q03162 620 aa1.3□□□□□ -2.2
CDC39YCR093W TRS130Q03660 1102 aa1.3□□□□□ -2.2
CDC39YCR093W YMR010WQ03687 405 aa1.3□□□□□ -2.2
CDC39YCR093W MRPL1Q04599 285 aa1.3□□□□□ -2.2
CDC39YCR093W TAH18Q12181 623 aa1.3□□□□□ -2.2
CDC39YCR093W YBR255C-AQ3E776 120 aa1.3□□□□□ -2.2
CDC39YCR093W EMP70P32802 667 aa1.3□□□□□ -2.2
CDC39YCR093W STV1P37296 890 aa1.3□□□□□ -2.2
CDC39YCR093W CDS1P38221 457 aa1.3□□□□□ -2.2
CDC39YCR093W YHL041WP38730 149 aa1.3□□□□□ -2.2
CDC39YCR093W MSS4P38994 779 aa1.3□□□□□ -2.2
CDC39YCR093W BEM4P39011 633 aa1.3□□□□□ -2.2
CDC39YCR093W PUS4P48567 403 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W UBP8P50102 471 aa1.3□□□□□ -2.2
CDC39YCR093W MRK1P50873 501 aa1.3□□□□□ -2.2
CDC39YCR093W SEC5P89102 971 aa1.3□□□□□ -2.2
CDC39YCR093W TRS31Q03337 283 aa1.3□□□□□ -2.2
CDC39YCR093W PLB2Q03674 706 aa1.3□□□□□ -2.2
CDC39YCR093W CRF1Q04930 467 aa1.3□□□□□ -2.2
CDC39YCR093W YDR338CQ05497 695 aa1.3□□□□□ -2.2
CDC39YCR093W NDE2Q07500 545 aa1.3□□□□□ -2.2
CDC39YCR093W DCS2Q12123 353 aa1.3□□□□□ -2.2
CDC39YCR093W GCN4P03069 281 aa1.3□□□□□ -2.2
CDC39YCR093W CHO2P05374 869 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W RPL6BP05739 176 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W GLN4P13188 809 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W MCM4P30665 933 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W MF(ALPHA)2P32435 120 aa1.3□□□□□ -2.2
CDC39YCR093W SEF1P34228 1148 aa1.3□□□□□ -2.2
CDC39YCR093W DBP8P38719 431 aa1.3□□□□□ -2.2
CDC39YCR093W GIP4P39732 760 aa1.3□□□□□ -2.2
CDC39YCR093W YEL020CP39994 560 aa1.3□□□□□ -2.2
CDC39YCR093W LTP1P40347 161 aa1.3□□□□□ -2.2
CDC39YCR093W NOP9P47077 666 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W RPL6AQ02326 176 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W YDR415CQ04033 374 aaPredicted RBP1.3□□□□□ -2.2
CDC39YCR093W RKI1Q12189 258 aa1.3□□□□□ -2.2
CDC39YCR093W APC2Q12440 853 aa1.3□□□□□ -2.2
CDC39YCR093W ULS1Q08562 1619 aa1.3□□□□□ -2.2
CDC39YCR093W URA3P03962 267 aa1.3□□□□□ -2.2
CDC39YCR093W SWI6P09959 803 aa1.3□□□□□ -2.2
CDC39YCR093W KRS1P15180 591 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W APN1P22936 367 aa1.3□□□□□ -2.2
CDC39YCR093W SAC6P32599 642 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W ICS2P38284 255 aa1.3□□□□□ -2.2
CDC39YCR093W MTL1P53214 551 aa1.3□□□□□ -2.2
CDC39YCR093W PSR1Q07800 427 aa1.3□□□□□ -2.2
CDC39YCR093W MRP2P10663 115 aaPredicted RBP1.3□□□□□ -2.2
CDC39YCR093W SEC31P38968 1273 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W SWD1P39706 426 aa1.3□□□□□ -2.2
CDC39YCR093W FMS1P50264 508 aa1.3□□□□□ -2.2
CDC39YCR093W CPR6P53691 371 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W GTR1Q00582 310 aa1.3□□□□□ -2.2
CDC39YCR093W CIK1Q01649 594 aa1.3□□□□□ -2.2
CDC39YCR093W FMP30Q02883 468 aa1.3□□□□□ -2.2
CDC39YCR093W YDR239CQ03780 787 aa1.3□□□□□ -2.2
CDC39YCR093W HMO1Q03973 246 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W YDL242WQ07746 117 aa1.3□□□□□ -2.2
CDC39YCR093W RPS21BQ3E754 87 aaKnown RBP1.3□□□□□ -2.2
CDC39YCR093W TRM3Q07527 1436 aa1.3□□□□□ -2.2
CDC39YCR093W FOB1O13329 566 aa1.29□□□□□ -2.2
CDC39YCR093W URE2P23202 354 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W LST4P34239 828 aa1.29□□□□□ -2.2
CDC39YCR093W PSY4P38193 441 aa1.29□□□□□ -2.2
CDC39YCR093W TDP1P38319 544 aa1.29□□□□□ -2.2
CDC39YCR093W ELP2P42935 788 aa1.29□□□□□ -2.2
CDC39YCR093W TEX1P53851 422 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W WAR1Q03631 944 aa1.29□□□□□ -2.2
CDC39YCR093W RCF1Q03713 159 aa1.29□□□□□ -2.2
CDC39YCR093W PLM2Q04383 521 aa1.29□□□□□ -2.2
CDC39YCR093W HIM1Q06674 414 aa1.29□□□□□ -2.2
CDC39YCR093W THI3Q07471 609 aa1.29□□□□□ -2.2
CDC39YCR093W WHI4Q07655 649 aaKnown RBP1.29□□□□□ -2.2
CDC39YCR093W SSP2Q08646 371 aa1.29□□□□□ -2.2
CDC39YCR093W MED2Q12124 431 aa1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 25.7 ms