RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 NAA30Q147X3 362 aaPredicted RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 C9orf131Q5VYM1 1079 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 ICE2Q659A1 982 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 PRR23BQ6ZRT6 265 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 ZNF438Q7Z4V0 828 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 JAZF1Q86VZ6 243 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 AMIGO3Q86WK7 504 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 FMNL3Q8IVF7 1028 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 RPUSD2Q8IZ73 545 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 FAM200AQ8TCP9 573 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 MKL1Q969V6 931 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 NUDT16Q96DE0 195 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 OSMRQ99650 979 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 INO80BQ9C086 356 aaPredicted RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 GOLGA6AQ9NYA3 693 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 MAP3K20Q9NYL2 800 aaKnown RBP3.81□□□□□ -1.8
VIM-210ENST00000637053 DAGLAQ9Y4D2 1042 aa3.81□□□□□ -1.8
VIM-210ENST00000637053 SOWAHDA6NJG2 315 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 PRMT3O60678 531 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 ECEL1O95672 775 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 ATP2B1P20020 1258 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 GTF2F1P35269 517 aaKnown RBP eCLIP3.8□□□□□ -1.8
VIM-210ENST00000637053 ASPAP45381 313 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 CTSWP56202 376 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 RAD51AP2Q09MP3 1159 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 CDK5R2Q13319 367 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 HDAC1Q13547 482 aaPredicted RBP3.8□□□□□ -1.8
VIM-210ENST00000637053 KCNMB1Q16558 191 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 AOC3Q16853 763 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 AKAP4Q5JQC9 854 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 FBXO33Q7Z6M2 555 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 NT5DC4Q86YG4 428 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 MSL3Q8N5Y2 521 aaKnown RBP3.8□□□□□ -1.8
VIM-210ENST00000637053 STAG1Q8WVM7 1258 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 IL17RAQ96F46 866 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 PPP1R16BQ96T49 567 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 TINF2Q9BSI4 451 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 ZSWIM4Q9H7M6 989 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 DDX56Q9NY93 547 aaKnown RBP3.8□□□□□ -1.8
VIM-210ENST00000637053 FEZ2Q9UHY8 353 aaPredicted RBP3.8□□□□□ -1.8
VIM-210ENST00000637053 PLAGL2Q9UPG8 496 aa3.8□□□□□ -1.8
VIM-210ENST00000637053 A6NHS1 94 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 METTL12A8MUP2 240 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 FAM87AP0C7U9 286 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 HOXA5P20719 270 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 SCP2P22307 547 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 HSD3B2P26439 372 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 MAOBP27338 520 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 LMOD1P29536 600 aaPredicted RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 CYP27C1Q4G0S4 372 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 CCDC184Q52MB2 194 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 PHLDB3Q6NSJ2 640 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 ZNF746Q6NUN9 644 aaPredicted RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 SLC23A3Q6PIS1 610 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 XKR5Q6UX68 686 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 DDX46Q7L014 1031 aaKnown RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 ATCAYQ86WG3 371 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 OTUD6BQ8N6M0 293 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 C1orf131Q8NDD1 294 aaKnown RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 PMFBP1Q8TBY8 1022 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 ARMC5Q96C12 935 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 TRIM44Q96DX7 344 aaPredicted RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 ZNF512BQ96KM6 892 aaPredicted RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 NAP1L4Q99733 375 aaKnown RBP3.79□□□□□ -1.8
VIM-210ENST00000637053 PAGR1Q9BTK6 254 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 MKNK1Q9BUB5 465 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 GGNBP2Q9H3C7 697 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 IFT57Q9NWB7 429 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 STIM2Q9P246 746 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 SFMBT1Q9UHJ3 866 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 TCEAL9Q9UHQ7 104 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 HDAC5Q9UQL6 1122 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 SCINQ9Y6U3 715 aa3.79□□□□□ -1.8
VIM-210ENST00000637053 NPIPB6E9PJ23 425 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 SCAMP3O14828 347 aaKnown RBP3.78□□□□□ -1.8
VIM-210ENST00000637053 VDRP11473 427 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 CD53P19397 219 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 MAN1A1P33908 653 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 KRTAP10-2P60368 255 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 FAM69CQ0P6D2 419 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 UBE4AQ14139 1066 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 DHX8Q14562 1220 aaKnown RBP3.78□□□□□ -1.8
VIM-210ENST00000637053 ZNF423Q2M1K9 1284 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 FILIP1Q7Z7B0 1213 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 PDILTQ8N807 584 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 SLC43A3Q8NBI5 491 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 ATL2Q8NHH9 583 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 ASAP3Q8TDY4 903 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 SNRNP27Q8WVK2 155 aaKnown RBP3.78□□□□□ -1.8
VIM-210ENST00000637053 JDP2Q8WYK2 163 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 BACH2Q9BYV9 841 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 BHLHE41Q9C0J9 482 aaPredicted RBP3.78□□□□□ -1.8
VIM-210ENST00000637053 KCNK12Q9HB15 430 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 GEMIN8Q9NWZ8 242 aaKnown RBP3.78□□□□□ -1.8
VIM-210ENST00000637053 AP4E1Q9UPM8 1137 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 CTNND2Q9UQB3 1225 aa3.78□□□□□ -1.8
VIM-210ENST00000637053 EREGO14944 169 aa3.77□□□□□ -1.81
VIM-210ENST00000637053 LEFTY1O75610 366 aa3.77□□□□□ -1.81
VIM-210ENST00000637053 VIL1P09327 827 aaKnown RBP3.77□□□□□ -1.81
VIM-210ENST00000637053 OXCT1P55809 520 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 178.3 ms