RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 MYO1EQ12965 1108 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 IFT88Q13099 833 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 DRP2Q13474 957 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 TLDC1Q6P9B6 456 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 YTHDF3Q7Z739 585 aaKnown RBP7.71□□□□□ -1.18
SCN1A-213ENST00000636759 LMCD1Q9NZU5 365 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 HPCAL4Q9UM19 191 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 TBC1D2BQ9UPU7 963 aa7.71□□□□□ -1.18
SCN1A-213ENST00000636759 ABCA3Q99758 1704 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 FLIIQ13045 1269 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 RINLQ6ZS11 566 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ARHGAP22Q7Z5H3 698 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 RBM12BQ8IXT5 1001 aaKnown RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 MIPOL1Q8TD10 442 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 NSMCE1Q8WV22 266 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 KIFC2Q96AC6 838 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 TBC1D31Q96DN5 1066 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 C19orf44Q9H6X5 657 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 BAIAP2L1Q9UHR4 511 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 TRPC6Q9Y210 931 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 SHANK3Q9BYB0 1731 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 SMIM24O75264 130 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 FESP07332 822 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 PYGBP11216 843 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 FERP16591 822 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 WHAMMP3Q1A5X7 153 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 GNPTABQ3T906 1256 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 FAM81AQ8TBF8 368 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 COG1Q8WTW3 980 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ALS2CR12Q96Q35 445 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 LZTFL1Q9NQ48 299 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 PAPOLBQ9NRJ5 636 aaKnown RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 TPX2Q9ULW0 747 aaKnown RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ERICH2A1L162 156 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 GOLGA8KD6RF30 607 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 TPD52L2O43399 206 aaKnown RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 GNAI2P04899 355 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 CPA1P15085 419 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ROR2Q01974 943 aaKnown RBP7.7□□□□□ -1.18
SCN1A-213ENST00000636759 USP4Q13107 963 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 SPECC1Q5M775 1068 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ZNF569Q5MCW4 686 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 MSL1Q68DK7 614 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 CCDC70Q6NSX1 233 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 FSIP1Q8NA03 581 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 ATRIPQ8WXE1 791 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 GDAP1L1Q96MZ0 367 aa7.7□□□□□ -1.18
SCN1A-213ENST00000636759 STX10O60499 249 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 ZKSCAN1P17029 563 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 FAM160A1Q05DH4 1040 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 MFSD4BQ5TF39 518 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 CWF19L1Q69YN2 538 aaKnown RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 RASEFQ8IZ41 740 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 IQCGQ9H095 443 aaKnown RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 SLC39A2Q9NP94 309 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 HYPKQ9NX55 129 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 BLOC1S6Q9UL45 172 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 PCDHGA4Q9Y5G9 962 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 GCP02774 474 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 ME1P48163 572 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 GOLGA8FQ08AF8 430 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 GOLGA8DPQ0D2H9 430 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 PDCLQ13371 301 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 TSHZ1Q6ZSZ6 1077 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 BZW1Q7L1Q6 419 aaKnown RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 CADPS2Q86UW7 1296 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 TRIM42Q8IWZ5 723 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 FUKQ8N0W3 1084 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 ZNF396Q96N95 335 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 PLEKHG4BQ96PX9 1271 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 NBPF7P0C2Y1 421 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 MTX1Q13505 466 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 PDIA5Q14554 519 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 ENOX2Q16206 610 aaKnown RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 AMOTQ4VCS5 1084 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 ACBD5Q5T8D3 534 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 MIS18BP1Q6P0N0 1132 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 WDR93Q6P2C0 686 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 TTLL7Q6ZT98 887 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 NOC3LQ8WTT2 800 aaKnown RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 DESI2Q9BSY9 194 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 IRX2Q9BZI1 471 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-213ENST00000636759 TSPYL4Q9UJ04 414 aa7.69□□□□□ -1.18
SCN1A-213ENST00000636759 BIN1O00499 593 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 CUL3Q13618 768 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 LARP1Q6PKG0 1096 aaKnown RBP7.68□□□□□ -1.18
SCN1A-213ENST00000636759 RASSF8Q8NHQ8 419 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 EPAS1Q99814 870 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 TMEM165Q9HC07 324 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 CORO1CQ9ULV4 474 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-213ENST00000636759 C4AP0C0L4 1744 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 C4BP0C0L5 1744 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 PFKFB2O60825 505 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 OATP04181 439 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 GNAT1P11488 350 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 ATP5JP18859 108 aa7.68□□□□□ -1.18
SCN1A-213ENST00000636759 TAF7Q15545 349 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-213ENST00000636759 ME3Q16798 604 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms