RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.28■■□□□ 1.48
CLN3-245ENST00000636172 CD2BP2O95400 341 aaKnown RBP24.27■■□□□ 1.48
CLN3-245ENST00000636172 NT5C2P49902 561 aa24.27■■□□□ 1.48
CLN3-245ENST00000636172 DLK2Q6UY11 383 aa24.27■■□□□ 1.48
CLN3-245ENST00000636172 CLEC11AQ9Y240 323 aa24.27■■□□□ 1.48
CLN3-245ENST00000636172 SSC5DA1L4H1 1573 aa24.27■■□□□ 1.48
CLN3-245ENST00000636172 TSPY2A6NKD2 308 aa24.26■■□□□ 1.47
CLN3-245ENST00000636172 ST18O60284 1047 aa24.26■■□□□ 1.47
CLN3-245ENST00000636172 TFAP4Q01664 338 aa24.26■■□□□ 1.47
CLN3-245ENST00000636172 USP48Q86UV5 1035 aa24.26■■□□□ 1.47
CLN3-245ENST00000636172 GREB1LQ9C091 1923 aaPredicted RBP24.25■■□□□ 1.47
CLN3-245ENST00000636172 LDHDQ86WU2 507 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 IL27Q8NEV9 243 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 GLIS2Q9BZE0 524 aaPredicted RBP24.25■■□□□ 1.47
CLN3-245ENST00000636172 ALDH8A1Q9H2A2 487 aaPredicted RBP24.25■■□□□ 1.47
CLN3-245ENST00000636172 AKR1B1P15121 316 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 RRP1BQ14684 758 aaKnown RBP24.25■■□□□ 1.47
CLN3-245ENST00000636172 Q6ZUG5 572 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 HOOK2Q96ED9 719 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 ZKSCAN3Q9BRR0 538 aa24.25■■□□□ 1.47
CLN3-245ENST00000636172 GPHNQ9NQX3 736 aaPredicted RBP24.25■■□□□ 1.47
CLN3-245ENST00000636172 PLIN4Q96Q06 1357 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 TSPY3P0CV98 308 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 TSPY8P0CW00 308 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 AK2P54819 239 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 TOB2Q14106 344 aaPredicted RBP24.24■■□□□ 1.47
CLN3-245ENST00000636172 SUPT20HL1Q3ZLR7 823 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 CERKLQ49MI3 558 aaPredicted RBP24.24■■□□□ 1.47
CLN3-245ENST00000636172 MAP1SQ66K74 1059 aaPredicted RBP24.24■■□□□ 1.47
CLN3-245ENST00000636172 CDC37L1Q7L3B6 337 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 FBXL16Q8N461 479 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 AGXT2Q9BYV1 514 aa24.24■■□□□ 1.47
CLN3-245ENST00000636172 NMT2O60551 498 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 ANP32AP39687 249 aaKnown RBP24.23■■□□□ 1.47
CLN3-245ENST00000636172 IQCA1Q86XH1 822 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 NEDD1Q8NHV4 660 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 IGDCC4Q8TDY8 1250 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 CDCA5Q96FF9 252 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 TMEM87BQ96K49 555 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 CCDC17Q96LX7 622 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 ZSCAN10Q96SZ4 725 aaPredicted RBP24.23■■□□□ 1.47
CLN3-245ENST00000636172 UBAC1Q9BSL1 405 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 MTA3Q9BTC8 594 aa24.23■■□□□ 1.47
CLN3-245ENST00000636172 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.23■■□□□ 1.47
CLN3-245ENST00000636172 SH2B2O14492 632 aaPredicted RBP24.22■■□□□ 1.47
CLN3-245ENST00000636172 IFIT3O14879 490 aaKnown RBP24.22■■□□□ 1.47
CLN3-245ENST00000636172 SHROOM1Q2M3G4 852 aaPredicted RBP24.22■■□□□ 1.47
CLN3-245ENST00000636172 DCAF15Q66K64 600 aa24.22■■□□□ 1.47
CLN3-245ENST00000636172 SNX21Q969T3 373 aa24.22■■□□□ 1.47
CLN3-245ENST00000636172 IL17RBQ9NRM6 502 aa24.22■■□□□ 1.47
CLN3-245ENST00000636172 TNKSO95271 1327 aa24.22■■□□□ 1.47
CLN3-245ENST00000636172 PHF20L1A8MW92 1017 aa24.21■■□□□ 1.47
CLN3-245ENST00000636172 FGD1P98174 961 aa24.21■■□□□ 1.47
CLN3-245ENST00000636172 SART3Q15020 963 aaKnown RBP24.21■■□□□ 1.47
CLN3-245ENST00000636172 TMEM67Q5HYA8 995 aa24.21■■□□□ 1.47
CLN3-245ENST00000636172 LY9Q9HBG7 655 aa24.21■■□□□ 1.47
CLN3-245ENST00000636172 GPBP1L1Q9HC44 474 aaPredicted RBP24.21■■□□□ 1.47
CLN3-245ENST00000636172 TCP11L1Q9NUJ3 509 aa24.21■■□□□ 1.47
CLN3-245ENST00000636172 ANGEL1Q9UNK9 670 aaKnown RBP24.21■■□□□ 1.47
CLN3-245ENST00000636172 GDF11O95390 407 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 JAG1P78504 1218 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 SEC23AQ15436 765 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 NOL8Q76FK4 1167 aaKnown RBP24.2■■□□□ 1.47
CLN3-245ENST00000636172 ENAHQ8N8S7 591 aaPredicted RBP24.2■■□□□ 1.47
CLN3-245ENST00000636172 BRF1Q92994 677 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 LARP6Q9BRS8 491 aaKnown RBP24.2■■□□□ 1.47
CLN3-245ENST00000636172 ZNF341Q9BYN7 854 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 SENP2Q9HC62 589 aa24.2■■□□□ 1.47
CLN3-245ENST00000636172 IGKV6D-41A0A0C4DH26 115 aa24.2■■□□□ 1.46
CLN3-245ENST00000636172 MPHOSPH10O00566 681 aaKnown RBP24.2■■□□□ 1.46
CLN3-245ENST00000636172 ANKRD1Q15327 319 aa24.2■■□□□ 1.46
CLN3-245ENST00000636172 ABCB5Q2M3G0 1257 aa24.2■■□□□ 1.46
CLN3-245ENST00000636172 FZD1Q9UP38 647 aa24.2■■□□□ 1.46
CLN3-245ENST00000636172 ATAD5Q96QE3 1844 aa24.19■■□□□ 1.46
CLN3-245ENST00000636172 ERICH2A1L162 156 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 GH2P01242 217 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 CAP2P40123 477 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 LIFRP42702 1097 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 MCM2P49736 904 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 WTAPQ15007 396 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 RCSD1Q6JBY9 416 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 CEP95Q96GE4 821 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 TBC1D2Q9BYX2 928 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 ZNF112Q9UJU3 913 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 PAPPA2Q9BXP8 1791 aa24.18■■□□□ 1.46
CLN3-245ENST00000636172 TRAF5O00463 557 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 GUCY1A2P33402 732 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 APOBRQ0VD83 1088 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 CCDC178Q5BJE1 867 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 TMEM179Q6ZVK1 233 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 CLEC10AQ8IUN9 316 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 TPCN1Q9ULQ1 816 aa24.17■■□□□ 1.46
CLN3-245ENST00000636172 NOVP48745 357 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 SGMS1Q86VZ5 419 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 HSCBQ8IWL3 235 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 ANKS1AQ92625 1134 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 MTMR4Q9NYA4 1195 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 BRPF3Q9ULD4 1205 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 ZBTB21Q9ULJ3 1066 aa24.16■■□□□ 1.46
CLN3-245ENST00000636172 LIMCH1Q9UPQ0 1083 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms