RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 CLCN6P51797 869 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 FKBP5Q13451 457 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 SHHQ15465 462 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 GPR142Q7Z601 462 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 SUCLG2Q96I99 432 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 VAMP4O75379 141 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 CNMDO75829 334 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 CCND3P30281 292 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 HERVK_113P62684 666 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 ERVK-9P63128 1117 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 ERVK-24P63145 666 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 CCNA1P78396 465 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 GSTO1P78417 241 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 METTL24Q5JXM2 366 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.74□□□□□ -1.49
SNCA-213ENST00000618500 ANKRD33Q7Z3H0 272 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 CERS3Q8IU89 383 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 ZNF428Q96B54 188 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 ZNF594Q96JF6 807 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 DHX36Q9H2U1 1008 aaKnown RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 HCN4Q9Y3Q4 1203 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 PTPRCP08575 1304 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 FANCIQ9NVI1 1328 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 GPR37L1O60883 481 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 PTPREP23469 700 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 BACE1P56817 501 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 RHBDL3P58872 404 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 MDM2Q00987 491 aaPredicted RBP5.74□□□□□ -1.49
SNCA-213ENST00000618500 USP17L2Q6R6M4 530 aa5.74□□□□□ -1.49
SNCA-213ENST00000618500 MYH8P13535 1937 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 RAB30Q15771 203 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 AAK1Q2M2I8 961 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 ADAMTS19Q8TE59 1207 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 PCGF6Q9BYE7 350 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 PUS3Q9BZE2 481 aaKnown RBP5.73□□□□□ -1.49
SNCA-213ENST00000618500 SRCIN1Q9C0H9 1055 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 TMOD4Q9NZQ9 345 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 RBPJLQ9UBG7 517 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 JAG2Q9Y219 1238 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 KBTBD13C9JR72 458 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 EYA2O00167 538 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 ASNSP08243 561 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 CHAF1AQ13111 956 aaPredicted RBP5.73□□□□□ -1.49
SNCA-213ENST00000618500 WWC1Q8IX03 1113 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 MSL3Q8N5Y2 521 aaKnown RBP5.73□□□□□ -1.49
SNCA-213ENST00000618500 TSPYL2Q9H2G4 693 aaPredicted RBP5.73□□□□□ -1.49
SNCA-213ENST00000618500 MROH7Q68CQ1 1323 aa5.73□□□□□ -1.49
SNCA-213ENST00000618500 ZNFX1Q9P2E3 1918 aaKnown RBP5.73□□□□□ -1.49
SNCA-213ENST00000618500 DDTLA6NHG4 134 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 APAF1O14727 1248 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 SEPT4O43236 478 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 STRNO43815 780 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 ZFPM1Q8IX07 1006 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 UHRF1Q96T88 793 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 DIS3Q9Y2L1 958 aaKnown RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 ZNF521Q96K83 1311 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 LDHCP07864 332 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 CLTBP09497 229 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 CST5P28325 142 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 IRX3P78415 501 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 FPGSQ05932 587 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 NEUROD2Q15784 382 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 C9orf50Q5SZB4 431 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 ATG9AQ7Z3C6 839 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 GAS2L1Q99501 681 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 EHD4Q9H223 541 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.72□□□□□ -1.49
SNCA-213ENST00000618500 DDX4Q9NQI0 724 aaKnown RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 TACC3Q9Y6A5 838 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 TRIM43BA6NCK2 446 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 TRIM75PA6NK02 468 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 COPB2P35606 906 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 USP14P54578 494 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 PPP4CP60510 307 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 PPIGQ13427 754 aaKnown RBP eCLIP5.72□□□□□ -1.49
SNCA-213ENST00000618500 LRRC24Q50LG9 513 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 USP38Q8NB14 1042 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 TRPV1Q8NER1 839 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 BADQ92934 168 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 TRIM43Q96BQ3 446 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 TIFAQ96CG3 184 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 EDC3Q96F86 508 aaKnown RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 TANGO6Q9C0B7 1094 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 BICC1Q9H694 974 aaKnown RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 C9orf78Q9NZ63 289 aaPredicted RBP5.72□□□□□ -1.49
SNCA-213ENST00000618500 COG5Q9UP83 839 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 CHMP3Q9Y3E7 222 aa5.72□□□□□ -1.49
SNCA-213ENST00000618500 SIP14410 1827 aa5.71□□□□□ -1.49
SNCA-213ENST00000618500 USP17L15C9J2P7 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L13C9JLJ4 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L11C9JVI0 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L18D6R9N7 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L22D6RA61 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L17D6RBQ6 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L19D6RCP7 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 USP17L20D6RJB6 530 aa5.71□□□□□ -1.5
SNCA-213ENST00000618500 ERC2O15083 957 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms